Genome wide association study and differential gene expression of Drosophila melanogaster under heat and cold stress
TS O’Leary
1 MA plots
All MA plots now have an FDR of 0.01 and no fold-change cutoff.
1.1 No gene labels
Cold v Ctrl MA plot
Hot v Ctrl MA plot
1.2 Labeled by padj
Cold v Ctrl MA plot
Hot v Ctrl MA plot
1.3 GWAS points
Cold v Ctrl MA plot
Hot v Ctrl MA plot
1.4 GWAS labels
Cold v Ctrl MA plot
Hot v Ctrl MA plot
1.5 GWAS labels colored by DEG sig
Cold v Ctrl MA plot
Hot v Ctrl MA plot
2 Top 50 differentially expressed genes
2.1 Heat shock
| gene | hot_fc | log2FoldChange.hot | padj.hot |
|---|---|---|---|
| CG3339 | down | -5.155 | 1.097e-27 |
| l(2)08717 | down | -2.3 | 4.051e-25 |
| pip | down | -3.434 | 5.188e-24 |
| stan | down | -2.592 | 2.063e-23 |
| Dhc36C | down | -2.724 | 1.51e-22 |
| ft | down | -3.361 | 4.602e-22 |
| CG17075 | down | -2.455 | 5.379e-22 |
| CG1801 | down | -3.692 | 2.458e-21 |
| CG9492 | down | -4.122 | 2.881e-20 |
| Dhc93AB | down | -3.104 | 1.029e-19 |
| Dscam1 | down | -1.795 | 1.792e-19 |
| CG42534 | down | -4.148 | 4.16e-19 |
| CG6125 | down | -2.153 | 7.197e-19 |
| CG1688 | down | -3.061 | 8.789e-19 |
| btv | down | -4.624 | 1.002e-18 |
| Sb | down | -4.59 | 1.126e-18 |
| CG43980 | down | -4.82 | 1.34e-18 |
| Muc14A | down | -2.612 | 1.372e-18 |
| hiw | down | -1.521 | 1.414e-18 |
| CG3348 | down | -3.219 | 1.822e-18 |
| Nos | down | -3.834 | 2.877e-18 |
| CG30263 | down | -3.978 | 4.212e-18 |
| jv | down | -2.334 | 4.212e-18 |
| conv | down | -4.136 | 4.94e-18 |
| NT1 | down | -6.652 | 4.94e-18 |
| Dop1R1 | down | -2.643 | 6.474e-18 |
| Shawl | down | -3.459 | 8.688e-18 |
| CG8745 | down | -2.145 | 1.314e-17 |
| CG14304 | down | -4.486 | 1.542e-17 |
| CG31465 | down | -6.373 | 2.078e-17 |
| Ugt86Di | down | -5.074 | 4.038e-17 |
| CR44327 | down | -2.536 | 4.654e-17 |
| salr | down | -3.028 | 4.671e-17 |
| nompC | down | -3.89 | 6.068e-17 |
| SIFaR | down | -4.022 | 6.357e-17 |
| Nlg4 | down | -2.488 | 8.891e-17 |
| CG15894 | down | -2.427 | 1.946e-16 |
| Cda5 | down | -1.12 | 2.097e-16 |
| CG4744 | down | -6.327 | 2.705e-16 |
| eag | down | -1.729 | 2.931e-16 |
| CG30272 | down | -3.39 | 3.009e-16 |
| Ac78C | down | -2.352 | 3.672e-16 |
| CG45105 | down | -3.336 | 4.007e-16 |
| Rab26 | down | -2.214 | 4.049e-16 |
| CG12950 | down | -2.918 | 4.628e-16 |
| CG32791 | down | -1.702 | 5.419e-16 |
| TkR99D | down | -3.825 | 8.6e-16 |
| Ddr | down | -3.329 | 9.219e-16 |
| GABA-B-R1 | down | -2.256 | 1.09e-15 |
| Sytbeta | down | -3.292 | 1.449e-15 |
| Hsp68 | up | 6.888 | 0 |
| DnaJ-1 | up | 3.727 | 2.219e-143 |
| Hsp70Bb | up | 7.003 | 2.219e-143 |
| stv | up | 4.471 | 2.373e-104 |
| Hsp26 | up | 4.279 | 5.676e-72 |
| Hsp67Bc | up | 4.785 | 2.957e-71 |
| Hsp27 | up | 3.532 | 4.06e-62 |
| Hsp83 | up | 2.106 | 6.281e-58 |
| Hsp23 | up | 6.872 | 8.789e-53 |
| Nop17l | up | 1.614 | 7.563e-52 |
| CG6770 | up | 1.78 | 5.402e-48 |
| Hop | up | 1.305 | 1.268e-43 |
| CG42240 | up | 1.131 | 1.65e-41 |
| Hsc70Cb | up | 1.271 | 5.313e-38 |
| Jafrac1 | up | 0.8308 | 7.251e-38 |
| CG16721 | up | 1.484 | 1.699e-36 |
| CG1416 | up | 1.24 | 1.833e-34 |
| CG5290 | up | 1.882 | 8.359e-34 |
| Droj2 | up | 1.165 | 9.102e-33 |
| Hsc70-3 | up | 1.522 | 2.984e-32 |
| Lsd-2 | up | 1.004 | 2.845e-30 |
| alphagamma-element:CR32865 | up | 6.317 | 1.507e-29 |
| sra | up | 1.258 | 9.836e-29 |
| CG10600 | up | 1.189 | 1.267e-28 |
| Mlf | up | 1.019 | 1.689e-28 |
| Capr | up | 0.9256 | 6.875e-28 |
| mim | up | 1.18 | 1.125e-26 |
| Hsp70Bc | up | 5.778 | 5.299e-26 |
| CG10077 | up | 1.398 | 5.714e-26 |
| Pgi | up | 0.9688 | 3e-25 |
| ref(2)P | up | 1.398 | 7.851e-24 |
| CG7033 | up | 1.009 | 4.144e-23 |
| e(y)3 | up | 0.9014 | 8.199e-23 |
| Trxr-1 | up | 1.139 | 1.335e-22 |
| Pa1 | up | 1.987 | 1.445e-22 |
| CG1943 | up | 1.14 | 1.445e-22 |
| PEK | up | 1.254 | 5.637e-22 |
| GstD1 | up | 0.8593 | 7.088e-22 |
| phol | up | 1.028 | 8.707e-22 |
| CG3680 | up | 0.8435 | 4.633e-21 |
| TfIIEalpha | up | 1.076 | 1.121e-20 |
| da | up | 0.8578 | 2.725e-20 |
| cact | up | 0.8173 | 3.294e-20 |
| Ran | up | 0.7748 | 6.905e-20 |
| CG1677 | up | 0.8251 | 9.427e-20 |
| betaTub56D | up | 1.038 | 1.749e-19 |
| Cctgamma | up | 0.8277 | 6.345e-19 |
| BRWD3 | up | 0.8852 | 7.197e-19 |
| l(1)G0469 | up | 1.272 | 7.197e-19 |
| Pdk | up | 1.35 | 1.224e-18 |
2.2 Cold shock
| gene | cold_fc | log2FoldChange.cold | padj.cold |
|---|---|---|---|
| stan | down | -2.535 | 2.296e-20 |
| Dhc93AB | down | -3.204 | 2.253e-19 |
| CG3339 | down | -4.294 | 5.99e-19 |
| CG1801 | down | -3.666 | 5.99e-19 |
| CG3280 | down | -3.068 | 5.99e-19 |
| CG42534 | down | -4.469 | 7.335e-19 |
| CG32791 | down | -1.855 | 1.687e-17 |
| ft | down | -2.987 | 8.646e-17 |
| pip | down | -2.89 | 1.435e-16 |
| Dscam1 | down | -1.683 | 2.136e-16 |
| CG43163 | down | -3.52 | 4.912e-16 |
| CG9492 | down | -3.725 | 5.06e-16 |
| rk | down | -3.238 | 8.245e-16 |
| Dhc36C | down | -2.296 | 1.463e-15 |
| CG8219 | down | -5.491 | 1.463e-15 |
| SIFaR | down | -4.039 | 2.331e-15 |
| Ac78C | down | -2.361 | 3.608e-15 |
| Ddr | down | -3.388 | 6.724e-15 |
| d | down | -3.775 | 1.027e-14 |
| CR45604 | down | -3.018 | 1.027e-14 |
| mtt | down | -3.664 | 1.135e-14 |
| Dhc62B | down | -3.892 | 1.49e-14 |
| iav | down | -4.075 | 1.696e-14 |
| CR45272 | down | -4.647 | 2.839e-14 |
| prom | down | -2.737 | 2.839e-14 |
| CG18519 | down | -3.233 | 2.839e-14 |
| CG43110 | down | -3.216 | 4.113e-14 |
| Nep5 | down | -3.804 | 4.113e-14 |
| conv | down | -3.69 | 6.626e-14 |
| rdgC | down | -1.94 | 6.946e-14 |
| Shawl | down | -3.097 | 7.672e-14 |
| CG44153 | down | -3.691 | 8.047e-14 |
| Hsp68 | down | -1.071 | 8.344e-14 |
| GluRIB | down | -2.415 | 9.254e-14 |
| CG45002 | down | -1.938 | 9.254e-14 |
| Sb | down | -3.89 | 1.557e-13 |
| Nlg4 | down | -2.28 | 1.557e-13 |
| CG4744 | down | -5.989 | 1.789e-13 |
| trh | down | -2.138 | 2.011e-13 |
| btv | down | -3.901 | 2.345e-13 |
| rdo | down | -3.167 | 2.827e-13 |
| Dop1R1 | down | -2.284 | 4.304e-13 |
| unc-13-4A | down | -2.109 | 4.464e-13 |
| TrpA1 | down | -4.111 | 4.79e-13 |
| CG42255 | down | -1.631 | 5.093e-13 |
| CG31814 | down | -3.185 | 5.781e-13 |
| rad | down | -1.922 | 6.059e-13 |
| Muc68Ca | down | -3.064 | 6.059e-13 |
| CG43795 | down | -2.427 | 6.591e-13 |
| eag | down | -1.562 | 7.105e-13 |
| Jafrac1 | up | 0.6228 | 1.102e-19 |
| Lsd-2 | up | 0.8045 | 1.486e-18 |
| endos | up | 0.7605 | 1.544e-17 |
| D1 | up | 0.684 | 1.687e-17 |
| Muc4B | up | 2.542 | 1.687e-17 |
| Capr | up | 0.7236 | 2.497e-16 |
| CG14478 | up | 0.8465 | 3.717e-15 |
| CG1677 | up | 0.73 | 7.404e-15 |
| Ran | up | 0.6814 | 7.51e-15 |
| CG15771 | up | 0.6845 | 1.537e-14 |
| bif | up | 0.7919 | 2.869e-14 |
| GstD1 | up | 0.7024 | 3.842e-14 |
| e(y)3 | up | 0.7182 | 4.174e-14 |
| mts | up | 0.638 | 6.428e-14 |
| phol | up | 0.8291 | 9.254e-14 |
| east | up | 0.7952 | 1.511e-13 |
| Act5C | up | 0.6184 | 2.345e-13 |
| CG8223 | up | 0.9441 | 2.752e-13 |
| cact | up | 0.6657 | 4.446e-13 |
| Rip11 | up | 0.7142 | 5.651e-13 |
| CG1440 | up | 0.6414 | 5.951e-13 |
| ssx | up | 0.6681 | 7.105e-13 |
| swa | up | 0.8273 | 1.017e-12 |
| tral | up | 0.8757 | 1.203e-12 |
| CG1943 | up | 0.8542 | 1.883e-12 |
| Pen | up | 0.898 | 2.887e-12 |
| cib | up | 0.8765 | 3.891e-12 |
| nocte | up | 0.7272 | 5.576e-12 |
| CG6597 | up | 0.6554 | 5.593e-12 |
| CG8963 | up | 0.6505 | 5.707e-12 |
| mim | up | 0.7948 | 6.11e-12 |
| Hmt4-20 | up | 0.7751 | 6.589e-12 |
| CG12262 | up | 0.8364 | 1.29e-11 |
| 26-29-p | up | 0.8999 | 1.457e-11 |
| rngo | up | 0.6756 | 1.476e-11 |
| Jupiter | up | 0.6516 | 1.526e-11 |
| CG4511 | up | 0.7374 | 1.68e-11 |
| da | up | 0.6498 | 1.814e-11 |
| pr-set7 | up | 0.8255 | 2.345e-11 |
| Cap | up | 0.775 | 2.683e-11 |
| CG10492 | up | 0.844 | 2.975e-11 |
| Gapdh2 | up | 0.7177 | 3.343e-11 |
| Rpt1 | up | 0.5432 | 3.942e-11 |
| Df31 | up | 0.7823 | 4.048e-11 |
| CG8108 | up | 0.6396 | 4.688e-11 |
| betaTub56D | up | 0.7807 | 5.6e-11 |
| Upf1 | up | 0.6236 | 5.655e-11 |
| CG9705 | up | 0.7375 | 8.723e-11 |
| Abi | up | 0.6488 | 8.733e-11 |
| Amun | up | 0.7009 | 9.284e-11 |
3 DEG LFC scatter & GWAS Density
3.1 GWAS scatter & density plots (10^-5)
| GWAS distributions | Heat-shock | Cold-shock |
|---|---|---|
| Other vs. CTmin | 0.5641033 | 0.5775028 |
| Other vs. CTmax | 0.4426838 | 0.6970872 |
| CTmin vs. CTmax | 0.5715501 | 0.8135801 |
3.2 GWAS scatter & density plots (10^-4)
## # A tibble: 16,107 x 9
## gene log2FoldChange.hot log2FoldChange.cold groupn id ID.hot ID.cold type gwas_g
## <chr> <dbl> <dbl> <chr> <int> <fct> <fct> <chr> <chr>
## 1 CR45339 -4.42 -1.43 NS: 6485 1 <NA> <NA> gwas_g Other
## 2 CR45340 -3.34 -5.49 NS: 6485 2 <NA> <NA> gwas_g Other
## 3 galectin -0.190 0.0203 NS: 6485 3 <NA> <NA> gwas_g Other
## 4 CG11374 -0.697 0.250 NS: 6485 4 <NA> <NA> gwas_g Other
## 5 CG11377 0.491 0.335 NS: 6485 5 <NA> <NA> gwas_g Other
## 6 Nhe1 0.302 0.0199 NS: 6485 6 <NA> <NA> gwas_g Other
## 7 Sam-S 0.304 0.382 NS: 6485 7 <NA> <NA> gwas_g Other
## 8 CG11455 0.205 0.0809 NS: 6485 8 <NA> <NA> gwas_g Other
## 9 CG3164 -0.0249 0.320 NS: 6485 9 <NA> <NA> gwas_g Other
## 10 CR44186 -4.31 -3.36 NS: 6485 10 <NA> <NA> gwas_g Other
## # … with 16,097 more rows
| GWAS distributions | Heat-shock | Cold-shock |
|---|---|---|
| Other vs. CTmin | 0.1475051 | 0.0679122 |
| Other vs. CTmax | 0.0054554 | 0.0091421 |
| Other vs. CTmin_CTmax | 0.9848098 | 0.9328658 |
| CTmin vs. CTmax | 0.1531904 | 0.0452680 |
| CTmin vs. CTmin_CTmax | 0.9781510 | 0.9716340 |
| CTmax vs. CTmin_CTmax | 0.8753813 | 0.9695981 |
3.3 GWAS scatter & density plots (10^-4) rm both
| GWAS distributions | Heat-shock | Cold-shock |
|---|---|---|
| Other vs. CTmin | 0.1475051 | 0.0679122 |
| Other vs. CTmax | 0.0054554 | 0.0091421 |
| CTmin vs. CTmax | 0.1531904 | 0.0452680 |
4 GWAS (pval cutoff 10^-5)
4.1 Summary
| GWAS | SNPs | SNPs annotated to genes | Unique genes | Sig DEGs | NS DEGs | No RNAseq data |
|---|---|---|---|---|---|---|
| CTmax | 21 | 19 | 12 | 9 | 3 | 0 |
| CTmin | 53 | 50 | 26 | 11 | 12 | 3 |
| ThermalBreadth | 23 | 19 | 17 | NA | NA | 17 |
4.2 Venn Diagram: SNPs & Genes
- The top GWAS SNPs (10^-5) associated with each phenotype. B. The unique genes associated with those top SNPs
4.3 CTmax
4.3.1 All hits
| ID | gene | grps | AvgMixedPval |
|---|---|---|---|
| 2R_10330800_INS | Oaz | INTRON | 8.0e-07 |
| 2R_6398772_SNP | lola | INTRON | 9.0e-07 |
| 2R_6398743_SNP | lola | INTRON | 9.0e-07 |
| 2R_10330805_SNP | Oaz | INTRON | 1.0e-06 |
| 3R_22515826_SNP | 2.3e-06 | ||
| 2L_12384183_SNP | bru-2 | INTRON | 2.4e-06 |
| 3R_25373467_SNP | 2.5e-06 | ||
| 2R_17564376_SNP | CG30263 | SYNONYMOUS_CODING | 2.6e-06 |
| 2R_10330722_SNP | Oaz | INTRON | 3.0e-06 |
| X_3381582_SNP | CR44999 | INTRON | 3.2e-06 |
| X_3381582_SNP | CG10803 | INTRON | 3.2e-06 |
| X_3381590_SNP | CG10803 | INTRON | 3.2e-06 |
| X_3381590_SNP | CR44999 | INTRON | 3.2e-06 |
| 2R_10330717_SNP | Oaz | INTRON | 3.5e-06 |
| X_3381391_SNP | CR44999 | INTRON | 3.7e-06 |
| X_3381391_SNP | CG10803 | INTRON | 3.7e-06 |
| X_3381587_SNP | CR44999 | INTRON | 4.1e-06 |
| X_3381587_SNP | CG10803 | INTRON | 4.1e-06 |
| 3L_9575326_SNP | CG42673 | INTRON | 6.0e-06 |
| X_5876026_SNP | Grip | INTRON | 6.0e-06 |
| 3R_3427376_SNP | CG34127 | INTRON | 7.6e-06 |
| 2L_19428598_SNP | CG13085 | INTRON | 8.4e-06 |
| 2L_19428598_SNP | CG16771 | INTRON | 8.4e-06 |
| 2R_10330701_SNP | Oaz | INTRON | 9.7e-06 |
| 2L_19428336_SNP | CG13085 | INTRON | 9.9e-06 |
| 2L_19428336_SNP | CG16771 | INTRON | 9.9e-06 |
| 3R_20025347_SNP | twin | INTRON | 1.0e-05 |
4.3.2 Group count
| grps | n |
|---|---|
| INTRON | 24 |
| SYNONYMOUS_CODING | 1 |
4.3.3 Gene counts
| gene | n |
|---|---|
| Oaz | 5 |
| CG10803 | 4 |
| CR44999 | 4 |
| CG13085 | 2 |
| CG16771 | 2 |
| lola | 2 |
| bru-2 | 1 |
| CG30263 | 1 |
| CG34127 | 1 |
| CG42673 | 1 |
| Grip | 1 |
| twin | 1 |
4.4 CTmin
4.4.1 All hits
| ID | gene | grps | AvgMixedPval |
|---|---|---|---|
| 2R_20313579_SNP | prom | INTRON | 0.0e+00 |
| 2R_20313579_SNP | CG42383 | INTRON | 0.0e+00 |
| X_4385442_SNP | CR32773 | INTRON | 1.0e-07 |
| 3R_13900959_SNP | 2.0e-07 | ||
| 2R_20308502_SNP | prom | INTRON | 4.0e-07 |
| 3R_12992895_SNP | Mur89F | INTRON | 7.0e-07 |
| 2R_20313917_SNP | prom | INTRON | 9.0e-07 |
| 2R_20313922_DEL | prom | INTRON | 9.0e-07 |
| 2R_20313930_SNP | prom | INTRON | 9.0e-07 |
| 2R_20313933_SNP | prom | INTRON | 9.0e-07 |
| 2R_20313935_INS | prom | INTRON | 9.0e-07 |
| 2R_20313938_SNP | prom | INTRON | 9.0e-07 |
| 2R_20313940_MNP | prom | INTRON | 9.0e-07 |
| 2R_20308558_SNP | prom | INTRON | 1.0e-06 |
| 2R_20250118_SNP | bs | INTRON | 1.0e-06 |
| 2R_20250118_SNP | CR44811 | INTRON | 1.0e-06 |
| 2R_20301097_SNP | CG45068 | SYNONYMOUS_CODING | 1.1e-06 |
| 2R_20301097_SNP | CG45069 | SYNONYMOUS_CODING | 1.1e-06 |
| 2R_20301239_SNP | CG45068 | NON_SYNONYMOUS_CODING | 1.1e-06 |
| 2R_20301239_SNP | CG45069 | NON_SYNONYMOUS_CODING | 1.1e-06 |
| 2R_20308533_SNP | prom | INTRON | 1.2e-06 |
| 2R_20313914_SNP | prom | INTRON | 1.3e-06 |
| 2L_2612712_SNP | 1.4e-06 | ||
| 2R_20313927_SNP | prom | INTRON | 1.5e-06 |
| 2R_20313911_SNP | prom | INTRON | 1.8e-06 |
| 2R_20307893_SNP | prom | NON_SYNONYMOUS_CODING | 1.8e-06 |
| 2R_20313916_SNP | prom | INTRON | 1.9e-06 |
| 2R_20308565_SNP | prom | INTRON | 1.9e-06 |
| 2R_20309964_SNP | prom | INTRON | 2.0e-06 |
| 2R_20309106_SNP | prom | INTRON | 2.2e-06 |
| 3R_11364111_SNP | CG18519 | SYNONYMOUS_CODING | 2.2e-06 |
| 2R_20313919_SNP | prom | INTRON | 2.4e-06 |
| 3R_14850882_SNP | CG14285 | NON_SYNONYMOUS_CODING | 3.1e-06 |
| 3R_14850882_SNP | CG14286 | NON_SYNONYMOUS_CODING | 3.1e-06 |
| 2R_20313912_SNP | prom | INTRON | 3.2e-06 |
| 2L_3465546_SNP | msl-2 | NON_SYNONYMOUS_CODING | 3.2e-06 |
| 2L_3465546_SNP | Pdsw | NON_SYNONYMOUS_CODING | 3.2e-06 |
| 2R_20301123_SNP | CG45069 | UTR_5_PRIME | 3.3e-06 |
| 2R_20301123_SNP | CG45068 | UTR_5_PRIME | 3.3e-06 |
| 3R_13552400_SNP | Lgr1 | INTRON | 3.6e-06 |
| 3R_11367299_SNP | CG18519 | NON_SYNONYMOUS_CODING | 4.0e-06 |
| 3R_11288771_SNP | AdamTS-A | INTRON | 4.2e-06 |
| 2R_20301091_SNP | CG45069 | UTR_5_PRIME | 4.2e-06 |
| 2R_20301091_SNP | CG45068 | UTR_5_PRIME | 4.2e-06 |
| 2R_12301745_SNP | Sema-2b | INTRON | 4.2e-06 |
| 2R_12301745_SNP | Menl-2 | INTRON | 4.2e-06 |
| 3R_12990694_SNP | Mur89F | INTRON | 4.3e-06 |
| 2R_20309307_SNP | prom | INTRON | 4.8e-06 |
| 3R_9949217_SNP | twf | SYNONYMOUS_CODING | 5.6e-06 |
| 3R_9949217_SNP | 140up | SYNONYMOUS_CODING | 5.6e-06 |
| 3R_13002842_SNP | Mur89F | INTRON | 5.7e-06 |
| 2R_20309122_SNP | prom | INTRON | 5.8e-06 |
| 3R_12997215_SNP | Mur89F | INTRON | 6.0e-06 |
| 2L_3396579_SNP | CR44792 | DOWNSTREAM | 6.6e-06 |
| 2L_3396577_SNP | CR44792 | DOWNSTREAM | 6.7e-06 |
| 3R_13552010_SNP | Lgr1 | INTRON | 6.7e-06 |
| 3L_4694662_SNP | CG15876 | SYNONYMOUS_CODING | 7.5e-06 |
| 3L_4694662_SNP | RhoGEF64C | SYNONYMOUS_CODING | 7.5e-06 |
| X_5639729_SNP | IntS6 | INTRON | 7.5e-06 |
| 2L_2612282_INS | CG15395 | DOWNSTREAM | 7.6e-06 |
| 2R_7024700_SNP | BBS4 | SYNONYMOUS_CODING | 7.8e-06 |
| 2R_20313809_SNP | prom | INTRON | 9.0e-06 |
| 3L_5853164_SNP | 9.6e-06 | ||
| 2L_3885863_SNP | capu | INTRON | 9.7e-06 |
4.4.2 Group count
| grps | n |
|---|---|
| INTRON | 38 |
| NON_SYNONYMOUS_CODING | 8 |
| SYNONYMOUS_CODING | 8 |
| UTR_5_PRIME | 4 |
| DOWNSTREAM | 3 |
4.4.3 Gene counts
| gene | n |
|---|---|
| prom | 24 |
| CG45068 | 4 |
| CG45069 | 4 |
| Mur89F | 4 |
| CG18519 | 2 |
| CR44792 | 2 |
| Lgr1 | 2 |
| 140up | 1 |
| AdamTS-A | 1 |
| BBS4 | 1 |
| bs | 1 |
| capu | 1 |
| CG14285 | 1 |
| CG14286 | 1 |
| CG15395 | 1 |
| CG15876 | 1 |
| CG42383 | 1 |
| CR32773 | 1 |
| CR44811 | 1 |
| IntS6 | 1 |
| Menl-2 | 1 |
| msl-2 | 1 |
| Pdsw | 1 |
| RhoGEF64C | 1 |
| Sema-2b | 1 |
| twf | 1 |
4.5 Thermal Breadth
4.5.1 All hits
| ID | gene | grps | AvgMixedPval |
|---|---|---|---|
| 3R_12992895_SNP | Mur89F | INTRON | 1.0e-07 |
| 2R_20313579_SNP | prom | INTRON | 6.0e-07 |
| 2R_20313579_SNP | CG42383 | INTRON | 6.0e-07 |
| 2R_7024700_SNP | BBS4 | SYNONYMOUS_CODING | 8.0e-07 |
| 3R_13900959_SNP | 1.3e-06 | ||
| 2R_20301097_SNP | CG45068 | SYNONYMOUS_CODING | 1.4e-06 |
| 2R_20301097_SNP | CG45069 | SYNONYMOUS_CODING | 1.4e-06 |
| 2R_20301239_SNP | CG45068 | NON_SYNONYMOUS_CODING | 1.4e-06 |
| 2R_20301239_SNP | CG45069 | NON_SYNONYMOUS_CODING | 1.4e-06 |
| 2L_2612712_SNP | 1.9e-06 | ||
| 3R_13552010_SNP | Lgr1 | INTRON | 3.0e-06 |
| 2R_20301123_SNP | CG45069 | UTR_5_PRIME | 3.3e-06 |
| 2R_20301123_SNP | CG45068 | UTR_5_PRIME | 3.3e-06 |
| 2R_20301091_SNP | CG45069 | UTR_5_PRIME | 3.4e-06 |
| 2R_20301091_SNP | CG45068 | UTR_5_PRIME | 3.4e-06 |
| 3R_5905483_SNP | 3.6e-06 | ||
| X_4385442_SNP | CR32773 | INTRON | 4.3e-06 |
| 3R_13552400_SNP | Lgr1 | INTRON | 4.5e-06 |
| 2L_20784197_SNP | 5.6e-06 | ||
| 2L_3465546_SNP | msl-2 | NON_SYNONYMOUS_CODING | 5.7e-06 |
| 2L_3465546_SNP | Pdsw | NON_SYNONYMOUS_CODING | 5.7e-06 |
| 3R_12991699_SNP | Mur89F | INTRON | 6.1e-06 |
| 3R_12990694_SNP | Mur89F | INTRON | 6.3e-06 |
| 3L_997191_SNP | trio | DOWNSTREAM | 6.6e-06 |
| 3R_4488005_SNP | p | SYNONYMOUS_CODING | 7.3e-06 |
| 3R_5901971_SNP | CG5361 | UPSTREAM | 7.3e-06 |
| X_18252257_DEL | CG6106 | UPSTREAM | 8.1e-06 |
| 2R_20250118_SNP | bs | INTRON | 9.4e-06 |
| 2R_20250118_SNP | CR44811 | INTRON | 9.4e-06 |
| X_5639729_SNP | IntS6 | INTRON | 9.6e-06 |
4.5.2 Group count
| grps | n |
|---|---|
| INTRON | 11 |
| NON_SYNONYMOUS_CODING | 4 |
| SYNONYMOUS_CODING | 4 |
| UTR_5_PRIME | 4 |
| UPSTREAM | 2 |
| DOWNSTREAM | 1 |
4.5.3 Gene counts
| gene | n |
|---|---|
| CG45068 | 4 |
| CG45069 | 4 |
| Mur89F | 3 |
| Lgr1 | 2 |
| BBS4 | 1 |
| bs | 1 |
| CG42383 | 1 |
| CG5361 | 1 |
| CG6106 | 1 |
| CR32773 | 1 |
| CR44811 | 1 |
| IntS6 | 1 |
| msl-2 | 1 |
| p | 1 |
| Pdsw | 1 |
| prom | 1 |
| trio | 1 |
5 GWAS Tables (pval cutoff 10^-4)
5.1 Summary
| GWAS | SNPs | SNPs annotated to genes | Unique genes | Sig DEGs | NS DEGs | No RNAseq data |
|---|---|---|---|---|---|---|
| CTmax | 193 | 169 | 99 | 59 | 39 | 1 |
| CTmin | 348 | 262 | 151 | 72 | 72 | 7 |
| ThermalBreadth | 358 | 297 | 188 | NA | NA | 188 |
5.2 Venn Diagram: SNPs & Genes
- The top GWAS SNPs (10^-4) associated with each phenotype. B. The unique genes associated with those top SNPs
5.3 CTmax
5.3.1 All hits
| ID | gene | grps | AvgMixedPval |
|---|---|---|---|
| 2R_10330800_INS | Oaz | INTRON | 8.00e-07 |
| 2R_6398772_SNP | lola | INTRON | 9.00e-07 |
| 2R_6398743_SNP | lola | INTRON | 9.00e-07 |
| 2R_10330805_SNP | Oaz | INTRON | 1.00e-06 |
| 3R_22515826_SNP | 2.30e-06 | ||
| 2L_12384183_SNP | bru-2 | INTRON | 2.40e-06 |
| 3R_25373467_SNP | 2.50e-06 | ||
| 2R_17564376_SNP | CG30263 | SYNONYMOUS_CODING | 2.60e-06 |
| 2R_10330722_SNP | Oaz | INTRON | 3.00e-06 |
| X_3381582_SNP | CR44999 | INTRON | 3.20e-06 |
| X_3381582_SNP | CG10803 | INTRON | 3.20e-06 |
| X_3381590_SNP | CG10803 | INTRON | 3.20e-06 |
| X_3381590_SNP | CR44999 | INTRON | 3.20e-06 |
| 2R_10330717_SNP | Oaz | INTRON | 3.50e-06 |
| X_3381391_SNP | CR44999 | INTRON | 3.70e-06 |
| X_3381391_SNP | CG10803 | INTRON | 3.70e-06 |
| X_3381587_SNP | CR44999 | INTRON | 4.10e-06 |
| X_3381587_SNP | CG10803 | INTRON | 4.10e-06 |
| 3L_9575326_SNP | CG42673 | INTRON | 6.00e-06 |
| X_5876026_SNP | Grip | INTRON | 6.00e-06 |
| 3R_3427376_SNP | CG34127 | INTRON | 7.60e-06 |
| 2L_19428598_SNP | CG13085 | INTRON | 8.40e-06 |
| 2L_19428598_SNP | CG16771 | INTRON | 8.40e-06 |
| 2R_10330701_SNP | Oaz | INTRON | 9.70e-06 |
| 2L_19428336_SNP | CG13085 | INTRON | 9.90e-06 |
| 2L_19428336_SNP | CG16771 | INTRON | 9.90e-06 |
| 3R_20025347_SNP | twin | INTRON | 1.00e-05 |
| 2R_10330633_INS | Oaz | INTRON | 1.02e-05 |
| 3L_14419091_SNP | bbg | INTRON | 1.03e-05 |
| 2R_10330626_SNP | Oaz | INTRON | 1.04e-05 |
| 2R_10330630_SNP | Oaz | INTRON | 1.04e-05 |
| 2R_10330637_SNP | Oaz | INTRON | 1.04e-05 |
| 2L_12339508_INS | CG31862 | DOWNSTREAM | 1.13e-05 |
| 3R_12743515_SNP | iab-8 | INTRON | 1.18e-05 |
| 3R_22504616_SNP | beat-VII | INTRON | 1.20e-05 |
| 2L_12339516_SNP | CG31862 | DOWNSTREAM | 1.23e-05 |
| 2L_19428576_SNP | CG16771 | SYNONYMOUS_CODING | 1.24e-05 |
| 2L_19428576_SNP | CG13085 | SYNONYMOUS_CODING | 1.24e-05 |
| 2R_10330676_DEL | Oaz | INTRON | 1.25e-05 |
| 2R_10330688_SNP | Oaz | INTRON | 1.25e-05 |
| 2R_10330693_SNP | Oaz | INTRON | 1.25e-05 |
| 2L_19428030_SNP | CG13085 | INTRON | 1.27e-05 |
| 2L_19428030_SNP | CG16771 | INTRON | 1.27e-05 |
| 2L_19437195_SNP | CG10237 | INTRON | 1.30e-05 |
| 2R_10330686_SNP | Oaz | INTRON | 1.32e-05 |
| X_10735255_SNP | sbr | INTRON | 1.32e-05 |
| X_10735255_SNP | CG15209 | INTRON | 1.32e-05 |
| X_10735262_INS | sbr | INTRON | 1.32e-05 |
| X_10735262_INS | CG15209 | INTRON | 1.32e-05 |
| 2L_12339502_SNP | CG31862 | DOWNSTREAM | 1.34e-05 |
| 2L_19429383_SNP | CG13085 | INTRON | 1.37e-05 |
| 2L_19429383_SNP | CG16771 | INTRON | 1.37e-05 |
| 3L_1853643_SNP | CG13936 | INTRON | 1.42e-05 |
| 2R_10330636_SNP | Oaz | INTRON | 1.43e-05 |
| 3R_20025331_SNP | twin | INTRON | 1.44e-05 |
| 3R_22137625_SNP | 1.46e-05 | ||
| X_5876030_SNP | Grip | INTRON | 1.48e-05 |
| 3R_6790711_SNP | 1.56e-05 | ||
| X_10125128_DEL | Ipod | UTR_3_PRIME | 1.59e-05 |
| X_3381972_SNP | CG10803 | SYNONYMOUS_CODING | 1.60e-05 |
| X_3381972_SNP | CR44999 | SYNONYMOUS_CODING | 1.60e-05 |
| 3R_3427301_SNP | CG34127 | INTRON | 1.62e-05 |
| 2R_10330615_SNP | Oaz | INTRON | 1.63e-05 |
| 2R_10330665_SNP | Oaz | INTRON | 1.70e-05 |
| X_16041977_SNP | disco-r | INTRON | 1.70e-05 |
| 3L_11137528_SNP | CG32082 | INTRON | 1.75e-05 |
| 3L_22193099_INS | olf413 | INTRON | 1.75e-05 |
| X_3381054_SNP | CR44999 | INTRON | 1.78e-05 |
| X_3381054_SNP | CG10803 | INTRON | 1.78e-05 |
| 2L_12384190_SNP | bru-2 | INTRON | 1.81e-05 |
| X_14256062_SNP | dpr8 | INTRON | 1.81e-05 |
| 2L_19426748_SNP | CG13085 | INTRON | 1.85e-05 |
| 2L_19426748_SNP | CG16771 | INTRON | 1.85e-05 |
| 2L_19426782_SNP | CG16771 | INTRON | 1.85e-05 |
| 2L_19426782_SNP | CG13085 | INTRON | 1.85e-05 |
| X_14256077_SNP | dpr8 | INTRON | 1.86e-05 |
| 2R_6398430_SNP | lola | INTRON | 1.88e-05 |
| X_10735231_INS | sbr | INTRON | 1.88e-05 |
| 2L_19423677_SNP | Pax | INTRON | 1.96e-05 |
| 2L_19423677_SNP | CG16771 | INTRON | 1.96e-05 |
| 2L_19429239_SNP | CG13085 | INTRON | 1.97e-05 |
| 2L_19429239_SNP | CG16771 | INTRON | 1.97e-05 |
| 3L_22174657_SNP | olf413 | INTRON | 2.06e-05 |
| X_14256080_SNP | dpr8 | INTRON | 2.23e-05 |
| 3R_22137592_SNP | 2.27e-05 | ||
| X_3382079_SNP | CG10803 | INTRON | 2.27e-05 |
| X_3382079_SNP | CR44999 | INTRON | 2.27e-05 |
| 3L_2048836_SNP | sls | SYNONYMOUS_CODING | 2.30e-05 |
| 2R_17564481_SNP | CG30263 | SYNONYMOUS_CODING | 2.42e-05 |
| 3L_14421116_SNP | bbg | INTRON | 2.44e-05 |
| 3R_18941021_SNP | Rassf | INTRON | 2.59e-05 |
| X_15413373_SNP | Ac13E | INTRON | 2.62e-05 |
| 2L_19424626_SNP | Pax | INTRON | 2.67e-05 |
| 2L_19424626_SNP | CG16771 | INTRON | 2.67e-05 |
| 2L_12339554_SNP | CG31862 | DOWNSTREAM | 2.71e-05 |
| 3R_6110171_SNP | CG43143 | INTRON | 2.75e-05 |
| 2L_3243400_SNP | 2.92e-05 | ||
| 2R_2894462_SNP | Tsp42Ec | INTRON | 2.92e-05 |
| 2R_2894462_SNP | CG30160 | INTRON | 2.92e-05 |
| X_5754038_SNP | 2.95e-05 | ||
| 3L_22144030_SNP | olf413 | INTRON | 3.03e-05 |
| 3L_4318551_SNP | Claspin | DOWNSTREAM | 3.04e-05 |
| 3L_4318551_SNP | CG32250 | DOWNSTREAM | 3.04e-05 |
| 2R_18905268_SNP | twi | INTRON | 3.06e-05 |
| 2R_18905268_SNP | CG42741 | INTRON | 3.06e-05 |
| 2R_4548600_SNP | ptc | SYNONYMOUS_CODING | 3.13e-05 |
| 3R_22504742_SNP | beat-VII | INTRON | 3.15e-05 |
| 2R_10330590_SNP | Oaz | INTRON | 3.18e-05 |
| 2R_10330596_MNP | Oaz | INTRON | 3.18e-05 |
| 2R_10330600_INS | Oaz | INTRON | 3.18e-05 |
| 3L_14339933_SNP | fz | INTRON | 3.23e-05 |
| 2L_19426685_SNP | CG13085 | INTRON | 3.39e-05 |
| 2L_19426685_SNP | CG16771 | INTRON | 3.39e-05 |
| 3L_22305238_SNP | Ten-m | INTRON | 3.43e-05 |
| 2R_10330606_SNP | Oaz | INTRON | 3.44e-05 |
| 2L_15220353_SNP | 3.48e-05 | ||
| 3L_16157384_SNP | CG5151 | UTR_5_PRIME | 3.55e-05 |
| 2R_9958844_SNP | Prosap | INTRON | 3.56e-05 |
| X_5928662_SNP | 3.58e-05 | ||
| 3L_1853640_SNP | CG13936 | INTRON | 3.62e-05 |
| 3R_7950242_SNP | CG4702 | INTRON | 3.67e-05 |
| 3L_14404836_SNP | CG3919 | NON_SYNONYMOUS_CODING | 3.68e-05 |
| 2L_18754429_SNP | 3.70e-05 | ||
| 3L_14152568_SNP | 3.73e-05 | ||
| 2L_19429322_SNP | CG13085 | INTRON | 3.78e-05 |
| 2L_19429322_SNP | CG16771 | INTRON | 3.78e-05 |
| 2R_10330594_SNP | Oaz | INTRON | 3.88e-05 |
| 3L_22646528_DEL | CG33772 | UPSTREAM | 3.91e-05 |
| 2L_18754466_SNP | 3.93e-05 | ||
| 3R_22805400_SNP | CG14253 | INTRON | 3.97e-05 |
| 2L_18754162_SNP | 4.09e-05 | ||
| 3L_16647994_SNP | Baldspot | INTRON | 4.12e-05 |
| 3L_16647994_SNP | snRNA:U12:73B | INTRON | 4.12e-05 |
| 3R_23411999_SNP | raps | UTR_3_PRIME | 4.13e-05 |
| 3R_23411999_SNP | CG5639 | UTR_3_PRIME | 4.13e-05 |
| 2L_12339589_SNP | CG31862 | DOWNSTREAM | 4.51e-05 |
| 3L_1852858_SNP | CG13936 | INTRON | 4.52e-05 |
| 2R_8432371_SNP | fra | INTRON | 4.71e-05 |
| 2R_8432371_SNP | CG33752 | INTRON | 4.71e-05 |
| 3L_4596471_DEL | Src64B | INTRON | 4.74e-05 |
| 3R_14376982_SNP | 4.74e-05 | ||
| 3R_12743496_SNP | iab-8 | INTRON | 4.76e-05 |
| X_15304333_SNP | Cngl | INTRON | 4.89e-05 |
| X_3382087_SNP | CG10803 | INTRON | 4.91e-05 |
| X_3382087_SNP | CR44999 | INTRON | 4.91e-05 |
| 2L_18753704_SNP | 4.92e-05 | ||
| 3R_22180208_SNP | CG33970 | INTRON | 5.02e-05 |
| 2L_16076386_SNP | beat-Ia | INTRON | 5.05e-05 |
| 2L_18758119_SNP | 5.06e-05 | ||
| 3R_8087122_SNP | svp | INTRON | 5.22e-05 |
| 3R_8087122_SNP | CG44037 | INTRON | 5.22e-05 |
| 2L_18753902_SNP | 5.28e-05 | ||
| 2L_12384172_SNP | bru-2 | INTRON | 5.31e-05 |
| 3R_7950239_SNP | CG4702 | INTRON | 5.40e-05 |
| 2L_8274876_DEL | Btk29A | INTRON | 5.42e-05 |
| X_3381344_SNP | CR44999 | INTRON | 5.55e-05 |
| X_3381344_SNP | CG10803 | INTRON | 5.55e-05 |
| X_3382189_SNP | CG10803 | SYNONYMOUS_CODING | 5.67e-05 |
| X_3382189_SNP | CR44999 | SYNONYMOUS_CODING | 5.67e-05 |
| 2L_19425002_SNP | Pax | INTRON | 5.85e-05 |
| 2L_19425002_SNP | CG16771 | INTRON | 5.85e-05 |
| 3L_22152549_DEL | olf413 | INTRON | 5.86e-05 |
| 3L_14152551_SNP | 5.93e-05 | ||
| 2L_15220356_SNP | 5.99e-05 | ||
| 2L_19422021_SNP | Pax | INTRON | 6.08e-05 |
| 3R_8103955_SNP | svp | INTRON | 6.10e-05 |
| 3R_19830988_DEL | KrT95D | INTRON | 6.28e-05 |
| 2L_19416856_SNP | Pax | INTRON | 6.50e-05 |
| 2L_19416856_SNP | Lectin-galC1 | INTRON | 6.50e-05 |
| 3R_24089238_SNP | CG43125 | NON_SYNONYMOUS_CODING | 6.51e-05 |
| 3R_24089238_SNP | CG43124 | NON_SYNONYMOUS_CODING | 6.51e-05 |
| X_13014365_SNP | CG42237 | INTRON | 6.67e-05 |
| 3L_9575411_SNP | CG42673 | INTRON | 6.69e-05 |
| 3R_20196586_SNP | CG17782 | NON_SYNONYMOUS_CODING | 6.84e-05 |
| 3R_20196586_SNP | CG13614 | NON_SYNONYMOUS_CODING | 6.84e-05 |
| 2R_3514811_SNP | CG43340 | INTRON | 6.88e-05 |
| 2L_19429387_SNP | CG13085 | INTRON | 6.91e-05 |
| 2L_19429387_SNP | CG16771 | INTRON | 6.91e-05 |
| 2L_6742211_SNP | CG11221 | UPSTREAM | 7.01e-05 |
| X_9642410_SNP | Sp1 | INTRON | 7.15e-05 |
| X_731454_SNP | CG43867 | INTRON | 7.22e-05 |
| 2R_17565035_SNP | CG30263 | SYNONYMOUS_CODING | 7.24e-05 |
| 3L_19857214_SNP | 7.27e-05 | ||
| 3L_14412291_SNP | bbg | INTRON | 7.36e-05 |
| 3L_3050532_SNP | CG32485 | UTR_5_PRIME | 7.37e-05 |
| 3L_3050532_SNP | Sk2 | UTR_5_PRIME | 7.37e-05 |
| 3L_5608245_SNP | 7.42e-05 | ||
| 3L_843314_SNP | Gr61a | INTRON | 7.42e-05 |
| 3L_843314_SNP | CG13889 | INTRON | 7.42e-05 |
| X_3381915_SNP | CG10803 | SYNONYMOUS_CODING | 7.57e-05 |
| X_3381915_SNP | CR44999 | SYNONYMOUS_CODING | 7.57e-05 |
| 2R_17584882_SNP | HmgZ | DOWNSTREAM | 7.74e-05 |
| 2R_17584882_SNP | CngB | DOWNSTREAM | 7.74e-05 |
| X_5671081_SNP | CG42699 | INTRON | 7.76e-05 |
| X_5671081_SNP | CG3108 | INTRON | 7.76e-05 |
| 2L_12339479_SNP | CG31862 | DOWNSTREAM | 7.87e-05 |
| 2L_6742224_DEL | CG11221 | UPSTREAM | 7.95e-05 |
| 2L_6742213_DEL | CG11221 | UPSTREAM | 8.21e-05 |
| 3R_16565056_SNP | CG17267 | UPSTREAM | 8.26e-05 |
| 3R_16565056_SNP | CG42322 | UPSTREAM | 8.26e-05 |
| 3L_8918810_SNP | Tsp66E | INTRON | 8.27e-05 |
| 3L_16156405_SNP | CG5151 | INTRON | 8.30e-05 |
| 2R_10330586_SNP | Oaz | INTRON | 8.31e-05 |
| 2L_14915314_SNP | CG42313 | INTRON | 8.33e-05 |
| 3R_22504708_SNP | beat-VII | INTRON | 8.34e-05 |
| 3L_6589428_SNP | ndl | NON_SYNONYMOUS_CODING | 8.41e-05 |
| 3L_10498413_SNP | A2bp1 | INTRON | 8.48e-05 |
| 3L_10498416_MNP | A2bp1 | INTRON | 8.48e-05 |
| 3L_8624605_SNP | Zasp66 | INTRON | 8.54e-05 |
| 3L_8624605_SNP | Cdc6 | INTRON | 8.54e-05 |
| 2R_17588521_MNP | HmgZ | INTRON | 8.63e-05 |
| 2R_17588521_MNP | HmgD | INTRON | 8.63e-05 |
| 2R_7460403_SNP | 8.63e-05 | ||
| 3L_920622_SNP | Glut1 | INTRON | 8.69e-05 |
| 2L_15220342_INS | 8.70e-05 | ||
| X_7994327_SNP | CG2258 | INTRON | 8.71e-05 |
| 3L_9061593_SNP | CG4911 | UTR_3_PRIME | 8.76e-05 |
| 3R_24785872_SNP | CG14521 | INTRON | 8.77e-05 |
| X_8790818_SNP | Moe | INTRON | 8.79e-05 |
| X_8790829_SNP | Moe | INTRON | 8.79e-05 |
| 2R_6417213_SNP | lola | INTRON | 8.84e-05 |
| 3L_19200340_SNP | fz2 | INTRON | 8.85e-05 |
| X_3382150_SNP | CR44999 | INTRON | 8.86e-05 |
| X_3382150_SNP | CG10803 | INTRON | 8.86e-05 |
| 3L_14691172_SNP | CG17177 | NON_SYNONYMOUS_CODING | 8.94e-05 |
| 3L_14691172_SNP | ome | NON_SYNONYMOUS_CODING | 8.94e-05 |
| 3L_2402512_SNP | CG45186 | INTRON | 9.00e-05 |
| 2R_17082950_SNP | Lapsyn | INTRON | 9.03e-05 |
| 3R_8110301_SNP | svp | INTRON | 9.11e-05 |
| 3R_17167115_SNP | CG16791 | INTRON | 9.12e-05 |
| X_7994276_SNP | CG2258 | INTRON | 9.26e-05 |
| 2R_10344322_SNP | Oaz | INTRON | 9.29e-05 |
| 2R_6426324_SNP | lola | INTRON | 9.38e-05 |
| 2R_6419048_SNP | lola | DOWNSTREAM | 9.42e-05 |
| 2L_2552957_SNP | CG3515 | UPSTREAM | 9.43e-05 |
| X_7994535_SNP | CG2258 | INTRON | 9.46e-05 |
| 2R_10615404_SNP | 9.56e-05 | ||
| 2L_12339547_SNP | CG31862 | DOWNSTREAM | 9.60e-05 |
| 3R_27479386_SNP | kek6 | INTRON | 9.97e-05 |
5.3.2 Group count
| grps | n |
|---|---|
| INTRON | 168 |
| SYNONYMOUS_CODING | 13 |
| DOWNSTREAM | 12 |
| NON_SYNONYMOUS_CODING | 8 |
| UPSTREAM | 7 |
| UTR_3_PRIME | 4 |
| UTR_5_PRIME | 3 |
5.3.3 Gene counts
| gene | n |
|---|---|
| Oaz | 23 |
| CG16771 | 14 |
| CG10803 | 12 |
| CR44999 | 12 |
| CG13085 | 11 |
| CG31862 | 7 |
| lola | 6 |
| Pax | 5 |
| olf413 | 4 |
| bbg | 3 |
| beat-VII | 3 |
| bru-2 | 3 |
| CG11221 | 3 |
| CG13936 | 3 |
| CG2258 | 3 |
| CG30263 | 3 |
| dpr8 | 3 |
| sbr | 3 |
| svp | 3 |
| A2bp1 | 2 |
| CG15209 | 2 |
| CG34127 | 2 |
| CG42673 | 2 |
| CG4702 | 2 |
| CG5151 | 2 |
| Grip | 2 |
| HmgZ | 2 |
| iab-8 | 2 |
| Moe | 2 |
| twin | 2 |
| Ac13E | 1 |
| Baldspot | 1 |
| beat-Ia | 1 |
| Btk29A | 1 |
| Cdc6 | 1 |
| CG10237 | 1 |
| CG13614 | 1 |
| CG13889 | 1 |
| CG14253 | 1 |
| CG14521 | 1 |
| CG16791 | 1 |
| CG17177 | 1 |
| CG17267 | 1 |
| CG17782 | 1 |
| CG30160 | 1 |
| CG3108 | 1 |
| CG32082 | 1 |
| CG32250 | 1 |
| CG32485 | 1 |
| CG33752 | 1 |
| CG33772 | 1 |
| CG33970 | 1 |
| CG3515 | 1 |
| CG3919 | 1 |
| CG42237 | 1 |
| CG42313 | 1 |
| CG42322 | 1 |
| CG42699 | 1 |
| CG42741 | 1 |
| CG43124 | 1 |
| CG43125 | 1 |
| CG43143 | 1 |
| CG43340 | 1 |
| CG43867 | 1 |
| CG44037 | 1 |
| CG45186 | 1 |
| CG4911 | 1 |
| CG5639 | 1 |
| Claspin | 1 |
| CngB | 1 |
| Cngl | 1 |
| disco-r | 1 |
| fra | 1 |
| fz | 1 |
| fz2 | 1 |
| Glut1 | 1 |
| Gr61a | 1 |
| HmgD | 1 |
| Ipod | 1 |
| kek6 | 1 |
| KrT95D | 1 |
| Lapsyn | 1 |
| Lectin-galC1 | 1 |
| ndl | 1 |
| ome | 1 |
| Prosap | 1 |
| ptc | 1 |
| raps | 1 |
| Rassf | 1 |
| Sk2 | 1 |
| sls | 1 |
| snRNA:U12:73B | 1 |
| Sp1 | 1 |
| Src64B | 1 |
| Ten-m | 1 |
| Tsp42Ec | 1 |
| Tsp66E | 1 |
| twi | 1 |
| Zasp66 | 1 |
5.4 CTmin
5.4.1 All hits
| ID | gene | grps | AvgMixedPval |
|---|---|---|---|
| 2R_20313579_SNP | prom | INTRON | 0.00e+00 |
| 2R_20313579_SNP | CG42383 | INTRON | 0.00e+00 |
| X_4385442_SNP | CR32773 | INTRON | 1.00e-07 |
| 3R_13900959_SNP | 2.00e-07 | ||
| 2R_20308502_SNP | prom | INTRON | 4.00e-07 |
| 3R_12992895_SNP | Mur89F | INTRON | 7.00e-07 |
| 2R_20313917_SNP | prom | INTRON | 9.00e-07 |
| 2R_20313922_DEL | prom | INTRON | 9.00e-07 |
| 2R_20313930_SNP | prom | INTRON | 9.00e-07 |
| 2R_20313933_SNP | prom | INTRON | 9.00e-07 |
| 2R_20313935_INS | prom | INTRON | 9.00e-07 |
| 2R_20313938_SNP | prom | INTRON | 9.00e-07 |
| 2R_20313940_MNP | prom | INTRON | 9.00e-07 |
| 2R_20308558_SNP | prom | INTRON | 1.00e-06 |
| 2R_20250118_SNP | bs | INTRON | 1.00e-06 |
| 2R_20250118_SNP | CR44811 | INTRON | 1.00e-06 |
| 2R_20301097_SNP | CG45068 | SYNONYMOUS_CODING | 1.10e-06 |
| 2R_20301097_SNP | CG45069 | SYNONYMOUS_CODING | 1.10e-06 |
| 2R_20301239_SNP | CG45068 | NON_SYNONYMOUS_CODING | 1.10e-06 |
| 2R_20301239_SNP | CG45069 | NON_SYNONYMOUS_CODING | 1.10e-06 |
| 2R_20308533_SNP | prom | INTRON | 1.20e-06 |
| 2R_20313914_SNP | prom | INTRON | 1.30e-06 |
| 2L_2612712_SNP | 1.40e-06 | ||
| 2R_20313927_SNP | prom | INTRON | 1.50e-06 |
| 2R_20313911_SNP | prom | INTRON | 1.80e-06 |
| 2R_20307893_SNP | prom | NON_SYNONYMOUS_CODING | 1.80e-06 |
| 2R_20313916_SNP | prom | INTRON | 1.90e-06 |
| 2R_20308565_SNP | prom | INTRON | 1.90e-06 |
| 2R_20309964_SNP | prom | INTRON | 2.00e-06 |
| 2R_20309106_SNP | prom | INTRON | 2.20e-06 |
| 3R_11364111_SNP | CG18519 | SYNONYMOUS_CODING | 2.20e-06 |
| 2R_20313919_SNP | prom | INTRON | 2.40e-06 |
| 3R_14850882_SNP | CG14285 | NON_SYNONYMOUS_CODING | 3.10e-06 |
| 3R_14850882_SNP | CG14286 | NON_SYNONYMOUS_CODING | 3.10e-06 |
| 2R_20313912_SNP | prom | INTRON | 3.20e-06 |
| 2L_3465546_SNP | msl-2 | NON_SYNONYMOUS_CODING | 3.20e-06 |
| 2L_3465546_SNP | Pdsw | NON_SYNONYMOUS_CODING | 3.20e-06 |
| 2R_20301123_SNP | CG45069 | UTR_5_PRIME | 3.30e-06 |
| 2R_20301123_SNP | CG45068 | UTR_5_PRIME | 3.30e-06 |
| 3R_13552400_SNP | Lgr1 | INTRON | 3.60e-06 |
| 3R_11367299_SNP | CG18519 | NON_SYNONYMOUS_CODING | 4.00e-06 |
| 3R_11288771_SNP | AdamTS-A | INTRON | 4.20e-06 |
| 2R_20301091_SNP | CG45069 | UTR_5_PRIME | 4.20e-06 |
| 2R_20301091_SNP | CG45068 | UTR_5_PRIME | 4.20e-06 |
| 2R_12301745_SNP | Sema-2b | INTRON | 4.20e-06 |
| 2R_12301745_SNP | Menl-2 | INTRON | 4.20e-06 |
| 3R_12990694_SNP | Mur89F | INTRON | 4.30e-06 |
| 2R_20309307_SNP | prom | INTRON | 4.80e-06 |
| 3R_9949217_SNP | twf | SYNONYMOUS_CODING | 5.60e-06 |
| 3R_9949217_SNP | 140up | SYNONYMOUS_CODING | 5.60e-06 |
| 3R_13002842_SNP | Mur89F | INTRON | 5.70e-06 |
| 2R_20309122_SNP | prom | INTRON | 5.80e-06 |
| 3R_12997215_SNP | Mur89F | INTRON | 6.00e-06 |
| 2L_3396579_SNP | CR44792 | DOWNSTREAM | 6.60e-06 |
| 2L_3396577_SNP | CR44792 | DOWNSTREAM | 6.70e-06 |
| 3R_13552010_SNP | Lgr1 | INTRON | 6.70e-06 |
| 3L_4694662_SNP | CG15876 | SYNONYMOUS_CODING | 7.50e-06 |
| 3L_4694662_SNP | RhoGEF64C | SYNONYMOUS_CODING | 7.50e-06 |
| X_5639729_SNP | IntS6 | INTRON | 7.50e-06 |
| 2L_2612282_INS | CG15395 | DOWNSTREAM | 7.60e-06 |
| 2R_7024700_SNP | BBS4 | SYNONYMOUS_CODING | 7.80e-06 |
| 2R_20313809_SNP | prom | INTRON | 9.00e-06 |
| 3L_5853164_SNP | 9.60e-06 | ||
| 2L_3885863_SNP | capu | INTRON | 9.70e-06 |
| 2R_20263633_SNP | bs | UTR_3_PRIME | 1.07e-05 |
| 3L_8696154_SNP | 1.07e-05 | ||
| 2R_20308557_SNP | prom | INTRON | 1.08e-05 |
| 2R_20313929_SNP | prom | INTRON | 1.11e-05 |
| 2L_14847936_SNP | CG15279 | INTRON | 1.17e-05 |
| X_4385623_SNP | CR32773 | INTRON | 1.19e-05 |
| 3R_11388164_SNP | 1.22e-05 | ||
| 2R_15691303_SNP | 1.23e-05 | ||
| 2R_20314643_SNP | prom | INTRON | 1.26e-05 |
| 3L_14188075_SNP | nuf | INTRON | 1.30e-05 |
| 2R_20250001_SNP | bs | INTRON | 1.37e-05 |
| 2R_20250001_SNP | CR44811 | INTRON | 1.37e-05 |
| 2R_10963282_SNP | 1.40e-05 | ||
| X_12403029_SNP | CG2556 | INTRON | 1.43e-05 |
| 2R_3769346_SNP | Dgk | UTR_5_PRIME | 1.45e-05 |
| 3R_5901971_SNP | CG5361 | UPSTREAM | 1.48e-05 |
| 2L_18774061_SNP | ham | INTRON | 1.49e-05 |
| 2L_18774061_SNP | CR43804 | INTRON | 1.49e-05 |
| 2R_20308551_SNP | prom | INTRON | 1.51e-05 |
| 2R_20306042_SNP | prom | INTRON | 1.52e-05 |
| 2R_17037739_INS | CG30389 | INTRON | 1.55e-05 |
| X_14518598_SNP | NetA | INTRON | 1.55e-05 |
| X_6270410_SNP | 1.55e-05 | ||
| 3R_12435590_SNP | NPF | INTRON | 1.58e-05 |
| 3R_12992188_SNP | Mur89F | INTRON | 1.61e-05 |
| 3L_7002933_SNP | Mp | INTRON | 1.80e-05 |
| 2R_20280640_SNP | slik | DOWNSTREAM | 1.81e-05 |
| X_14991195_SNP | Rab3-GEF | INTRON | 1.83e-05 |
| 3R_12571587_SNP | bxd | EXON | 1.85e-05 |
| 3R_9755267_SNP | 1.85e-05 | ||
| X_14994016_SNP | Rab3-GEF | SYNONYMOUS_CODING | 1.85e-05 |
| 3R_12997318_SNP | Mur89F | INTRON | 2.01e-05 |
| 2R_20263506_SNP | bs | NON_SYNONYMOUS_CODING | 2.02e-05 |
| 2R_20263738_SNP | bs | UTR_3_PRIME | 2.02e-05 |
| 2R_20263740_INS | bs | UTR_3_PRIME | 2.02e-05 |
| 2R_20263742_SNP | bs | UTR_3_PRIME | 2.02e-05 |
| 2L_14861293_SNP | 2.04e-05 | ||
| 2R_12971842_SNP | CG30460 | INTRON | 2.08e-05 |
| 2R_3772050_SNP | Dgk | INTRON | 2.10e-05 |
| 3R_11382934_SNP | 2.12e-05 | ||
| 2R_20233630_SNP | bs | INTRON | 2.14e-05 |
| X_4385497_SNP | CR32773 | INTRON | 2.14e-05 |
| 2R_20304475_SNP | prom | DOWNSTREAM | 2.18e-05 |
| 2R_20313932_SNP | prom | INTRON | 2.19e-05 |
| 3R_11367274_SNP | CG18519 | SYNONYMOUS_CODING | 2.22e-05 |
| 3R_11367340_SNP | CG18519 | SYNONYMOUS_CODING | 2.22e-05 |
| 3R_11367346_SNP | CG18519 | SYNONYMOUS_CODING | 2.22e-05 |
| 3R_11423065_SNP | 2.25e-05 | ||
| 2R_20257701_SNP | bs | INTRON | 2.30e-05 |
| 2R_20257701_SNP | CR44811 | INTRON | 2.30e-05 |
| 2R_20303569_SNP | prom | INTRON | 2.30e-05 |
| 2R_20303569_SNP | CG45068 | INTRON | 2.30e-05 |
| 2L_14829539_SNP | 2.36e-05 | ||
| 2R_20252998_SNP | CR44811 | INTRON | 2.36e-05 |
| 2R_20252998_SNP | bs | INTRON | 2.36e-05 |
| 2L_16629322_SNP | CG42389 | INTRON | 2.42e-05 |
| 2L_16629322_SNP | CR44151 | INTRON | 2.42e-05 |
| 2R_20280846_SNP | slik | DOWNSTREAM | 2.43e-05 |
| X_9640945_SNP | Sp1 | INTRON | 2.43e-05 |
| 3R_9755266_SNP | 2.54e-05 | ||
| 2R_17103833_SNP | CG15661 | SYNONYMOUS_CODING | 2.55e-05 |
| 3R_12041136_SNP | CR45641 | DOWNSTREAM | 2.58e-05 |
| X_5908964_SNP | CR44499 | DOWNSTREAM | 2.58e-05 |
| 2R_20308522_SNP | prom | INTRON | 2.69e-05 |
| 2R_20257613_SNP | bs | INTRON | 2.70e-05 |
| 2R_20257613_SNP | CR44811 | INTRON | 2.70e-05 |
| 3R_5905483_SNP | 2.70e-05 | ||
| 3R_19770578_SNP | CG12268 | INTRON | 2.74e-05 |
| 3R_19770583_SNP | CG12268 | INTRON | 2.74e-05 |
| 3R_19770588_SNP | CG12268 | INTRON | 2.74e-05 |
| 3R_12996262_SNP | Mur89F | INTRON | 2.82e-05 |
| 3R_4247244_SNP | CG45263 | INTRON | 2.83e-05 |
| 3R_4247244_SNP | Obp85a | INTRON | 2.83e-05 |
| 3R_9755188_SNP | 2.85e-05 | ||
| 2L_1964167_SNP | erm | INTRON | 2.87e-05 |
| 3L_3637779_SNP | dar1 | INTRON | 2.88e-05 |
| 3R_11422476_INS | 2.88e-05 | ||
| 2R_6825968_SNP | Spn47C | UTR_3_PRIME | 2.89e-05 |
| 2R_20280809_SNP | slik | DOWNSTREAM | 2.96e-05 |
| 3R_9949202_SNP | twf | SYNONYMOUS_CODING | 2.97e-05 |
| 3R_9949202_SNP | 140up | SYNONYMOUS_CODING | 2.97e-05 |
| 3R_12992004_SNP | Mur89F | INTRON | 2.98e-05 |
| 3R_12991699_SNP | Mur89F | INTRON | 3.03e-05 |
| X_7604829_INS | 3.04e-05 | ||
| 3L_2010684_SNP | CR44535 | EXON | 3.13e-05 |
| 2L_14781915_SNP | CR15280 | EXON | 3.24e-05 |
| 2R_20313730_SNP | prom | INTRON | 3.24e-05 |
| 3R_13524790_SNP | osa | INTRON | 3.26e-05 |
| 2R_20260408_SNP | bs | INTRON | 3.32e-05 |
| 2R_20306197_SNP | prom | SYNONYMOUS_CODING | 3.34e-05 |
| 2R_12696827_SNP | 3.35e-05 | ||
| 3R_5285535_SNP | GstZ2 | INTRON | 3.36e-05 |
| X_14993421_SNP | Rab3-GEF | INTRON | 3.38e-05 |
| X_9662105_SNP | 3.43e-05 | ||
| 2R_14565483_DEL | CG44434 | DOWNSTREAM | 3.45e-05 |
| 2R_14565483_DEL | CG44435 | DOWNSTREAM | 3.45e-05 |
| 2R_20296526_SNP | SerT | SYNONYMOUS_CODING | 3.51e-05 |
| 3R_11400768_SNP | 3.51e-05 | ||
| 3R_12992053_DEL | Mur89F | INTRON | 3.53e-05 |
| 3R_11363907_SNP | CG18519 | SYNONYMOUS_CODING | 3.58e-05 |
| 3R_11363907_SNP | CG18522 | SYNONYMOUS_CODING | 3.58e-05 |
| 2L_1090401_SNP | CG4629 | INTRON | 3.60e-05 |
| 2R_1991490_SNP | EcR | INTRON | 3.60e-05 |
| 2R_1991491_SNP | EcR | INTRON | 3.60e-05 |
| 3R_12023256_SNP | sra | UTR_3_PRIME | 3.72e-05 |
| 3R_12023256_SNP | CG6126 | UTR_3_PRIME | 3.72e-05 |
| 3R_17772582_SNP | 3.73e-05 | ||
| 2R_17983519_SNP | CG11073 | INTRON | 3.78e-05 |
| 2R_20269748_SNP | mAChR-A | INTRON | 3.81e-05 |
| 2L_5945189_SNP | Gpdh | INTRON | 3.86e-05 |
| 3L_3812775_SNP | CG12006 | SYNONYMOUS_CODING | 3.86e-05 |
| 2L_14829550_SNP | 3.88e-05 | ||
| 2L_14861303_SNP | 3.90e-05 | ||
| 3L_12306383_SNP | 3.90e-05 | ||
| 2R_10963284_SNP | 3.96e-05 | ||
| 3L_4254140_SNP | ago | UPSTREAM | 3.98e-05 |
| 3L_4254140_SNP | CG1265 | UPSTREAM | 3.98e-05 |
| 2L_5613850_SNP | CG14010 | INTRON | 4.01e-05 |
| 2L_2601212_SNP | CR44789 | EXON | 4.04e-05 |
| 2R_20258747_SNP | bs | INTRON | 4.07e-05 |
| 3R_11405546_SNP | 4.24e-05 | ||
| 3R_11411525_SNP | 4.28e-05 | ||
| 3R_11425747_SNP | 4.31e-05 | ||
| X_18167335_SNP | 4.40e-05 | ||
| 2L_14849951_SNP | CG15279 | INTRON | 4.44e-05 |
| 2R_12704274_SNP | CG5550 | SYNONYMOUS_CODING | 4.44e-05 |
| 2R_12704274_SNP | CR43417 | SYNONYMOUS_CODING | 4.44e-05 |
| 3L_4694906_SNP | RhoGEF64C | INTRON | 4.44e-05 |
| 3L_4694906_SNP | CG15876 | INTRON | 4.44e-05 |
| 2R_1618770_SNP | 4.47e-05 | ||
| 2R_20306103_SNP | prom | INTRON | 4.48e-05 |
| 3R_12996121_SNP | Mur89F | INTRON | 4.64e-05 |
| X_12899932_SNP | rad | INTRON | 4.64e-05 |
| 3R_9755209_INS | 4.69e-05 | ||
| X_14994013_SNP | Rab3-GEF | SYNONYMOUS_CODING | 4.71e-05 |
| X_14994019_SNP | Rab3-GEF | SYNONYMOUS_CODING | 4.71e-05 |
| 3R_13928920_SNP | sr | INTRON | 4.73e-05 |
| 3L_997191_SNP | trio | DOWNSTREAM | 4.76e-05 |
| 3L_4254108_SNP | ago | INTRON | 4.78e-05 |
| 3L_4254108_SNP | CG1265 | INTRON | 4.78e-05 |
| 3R_11420351_SNP | 4.82e-05 | ||
| 3R_11420344_SNP | 4.83e-05 | ||
| 2L_5964548_SNP | psd | INTRON | 4.87e-05 |
| 2L_5964548_SNP | CG13992 | INTRON | 4.87e-05 |
| 3R_9755183_INS | 4.87e-05 | ||
| 3R_12996202_SNP | Mur89F | INTRON | 4.91e-05 |
| 2R_12628367_SNP | 4.92e-05 | ||
| 3L_3812970_SNP | CG12006 | SYNONYMOUS_CODING | 4.94e-05 |
| X_18251508_DEL | 4.94e-05 | ||
| X_3945990_SNP | 5.00e-05 | ||
| 2R_20257397_SNP | bs | INTRON | 5.01e-05 |
| 2R_20257397_SNP | CR44811 | INTRON | 5.01e-05 |
| 2L_14839600_SNP | CR43805 | DOWNSTREAM | 5.07e-05 |
| 2R_5227902_SNP | CG13954 | INTRON | 5.08e-05 |
| 2R_5227902_SNP | CG13739 | INTRON | 5.08e-05 |
| 3R_12992010_SNP | Mur89F | INTRON | 5.11e-05 |
| 3R_12996231_DEL | Mur89F | INTRON | 5.17e-05 |
| 3R_19565063_SNP | Hmgcr | INTRON | 5.18e-05 |
| 4_212564_SNP | CG2316 | INTRON | 5.18e-05 |
| 3R_10974341_SNP | 5.24e-05 | ||
| 2L_8257947_SNP | Btk29A | DOWNSTREAM | 5.27e-05 |
| 2L_8257947_SNP | CG8086 | DOWNSTREAM | 5.27e-05 |
| 3R_9755264_SNP | 5.32e-05 | ||
| 3R_11384632_SNP | 5.36e-05 | ||
| 3L_12833443_SNP | CG10960 | INTRON | 5.37e-05 |
| X_18915078_SNP | CG43759 | INTRON | 5.38e-05 |
| 2L_3013371_SNP | CG17265 | INTRON | 5.49e-05 |
| 3L_16500200_SNP | CG43373 | INTRON | 5.52e-05 |
| 2R_20276477_SNP | mAChR-A | INTRON | 5.61e-05 |
| 3L_8207415_SNP | CG8006 | DOWNSTREAM | 5.61e-05 |
| 3L_8207415_SNP | CG8012 | DOWNSTREAM | 5.61e-05 |
| 2R_9189361_DEL | CG17047 | DOWNSTREAM | 5.62e-05 |
| X_14993547_SNP | Rab3-GEF | INTRON | 5.63e-05 |
| 2L_5867252_SNP | rau | INTRON | 5.64e-05 |
| 2L_1430353_SNP | 5.65e-05 | ||
| 2R_20298783_SNP | SerT | UPSTREAM | 5.67e-05 |
| 2R_20298783_SNP | CG45068 | UPSTREAM | 5.67e-05 |
| 2R_20301145_SNP | CG45068 | SYNONYMOUS_CODING | 5.70e-05 |
| 2R_20301145_SNP | CG45069 | SYNONYMOUS_CODING | 5.70e-05 |
| 2R_3551128_SNP | CG2065 | UPSTREAM | 5.71e-05 |
| 2R_3551128_SNP | CG2070 | UPSTREAM | 5.71e-05 |
| 3L_11835004_SNP | 5.72e-05 | ||
| X_6297829_SNP | 5.74e-05 | ||
| 2L_14839047_SNP | 5.78e-05 | ||
| 2L_14839838_SNP | CR43805 | DOWNSTREAM | 5.78e-05 |
| 2R_17118453_SNP | ASPP | INTRON | 5.88e-05 |
| 2R_20263548_SNP | bs | UTR_3_PRIME | 5.91e-05 |
| 3R_11405178_SNP | 5.92e-05 | ||
| 3R_12989857_SNP | Mur89F | INTRON | 5.92e-05 |
| X_18167373_DEL | 5.92e-05 | ||
| 2L_14839629_INS | CR43805 | DOWNSTREAM | 5.96e-05 |
| 2R_20300858_SNP | CG45068 | SYNONYMOUS_CODING | 5.98e-05 |
| 2R_20300858_SNP | CG45069 | SYNONYMOUS_CODING | 5.98e-05 |
| 3R_13900852_SNP | 6.03e-05 | ||
| 3R_13900177_SNP | 6.08e-05 | ||
| X_18251504_SNP | 6.09e-05 | ||
| X_18251505_SNP | 6.09e-05 | ||
| 3R_11420325_SNP | 6.24e-05 | ||
| 3L_4254603_DEL | CG1265 | UPSTREAM | 6.26e-05 |
| 3L_4254603_DEL | ago | UPSTREAM | 6.26e-05 |
| 2R_9926382_SNP | mam | SYNONYMOUS_CODING | 6.31e-05 |
| 3R_11420346_SNP | 6.32e-05 | ||
| 3R_11402243_SNP | 6.37e-05 | ||
| 3R_12996042_SNP | Mur89F | INTRON | 6.39e-05 |
| 2R_17798495_SNP | Fili | INTRON | 6.40e-05 |
| 2L_14840839_SNP | CR43805 | DOWNSTREAM | 6.45e-05 |
| 3R_11425064_SNP | 6.45e-05 | ||
| 2R_12628349_SNP | 6.46e-05 | ||
| 2R_16139285_SNP | CG9864 | INTRON | 6.51e-05 |
| 2R_20258970_SNP | bs | INTRON | 6.51e-05 |
| 3R_11420330_SNP | 6.52e-05 | ||
| 3R_11422667_SNP | 6.52e-05 | ||
| 2R_12009356_SNP | Jhe | NON_SYNONYMOUS_CODING | 6.54e-05 |
| X_7588127_SNP | CHES-1-like | INTRON | 6.66e-05 |
| 3R_5724642_SNP | Glut4EF | INTRON | 6.72e-05 |
| 3R_24617170_SNP | intr | UTR_3_PRIME | 6.75e-05 |
| 3R_24617170_SNP | CG34295 | UTR_3_PRIME | 6.75e-05 |
| 3R_19770553_SNP | CG12268 | INTRON | 6.76e-05 |
| 2R_19373351_SNP | CG43795 | INTRON | 6.81e-05 |
| 3R_12988032_SNP | Mur89F | INTRON | 6.82e-05 |
| 3R_11367310_SNP | CG18519 | NON_SYNONYMOUS_CODING | 6.84e-05 |
| X_18252257_DEL | CG6106 | UPSTREAM | 6.92e-05 |
| 3L_4671269_SNP | axo | INTRON | 7.01e-05 |
| 2R_10962869_SNP | 7.03e-05 | ||
| 3R_12996058_SNP | Mur89F | INTRON | 7.07e-05 |
| 2R_3772313_SNP | Dgk | INTRON | 7.10e-05 |
| 3L_13383636_SNP | Poc1 | UPSTREAM | 7.10e-05 |
| 2R_18750111_SNP | 7.21e-05 | ||
| X_18252738_DEL | CG6106 | UPSTREAM | 7.21e-05 |
| X_18252748_SNP | CG6106 | UPSTREAM | 7.21e-05 |
| 2L_14847382_SNP | CG15279 | INTRON | 7.26e-05 |
| 2R_6825911_SNP | Spn47C | DOWNSTREAM | 7.26e-05 |
| 3R_11420431_DEL | 7.26e-05 | ||
| 2R_9208823_SNP | 7.29e-05 | ||
| X_5631703_INS | CG32758 | UTR_5_PRIME | 7.32e-05 |
| X_5631703_INS | IntS6 | UTR_5_PRIME | 7.32e-05 |
| 2L_14840782_SNP | CR43805 | DOWNSTREAM | 7.33e-05 |
| 2L_14840900_SNP | CR43805 | DOWNSTREAM | 7.33e-05 |
| 3R_11347985_SNP | 7.35e-05 | ||
| 3R_11355047_SNP | CG31296 | DOWNSTREAM | 7.36e-05 |
| X_16295460_SNP | CG9981 | SYNONYMOUS_CODING | 7.45e-05 |
| X_18167332_SNP | 7.47e-05 | ||
| 2L_1264510_SNP | robo3 | INTRON | 7.48e-05 |
| 2R_13598343_SNP | CG6424 | INTRON | 7.51e-05 |
| 2L_20784197_SNP | 7.52e-05 | ||
| 3R_9755191_SNP | 7.56e-05 | ||
| 3R_9755213_SNP | 7.60e-05 | ||
| 2R_20253495_SNP | CR44811 | INTRON | 7.63e-05 |
| 2R_20253495_SNP | bs | INTRON | 7.63e-05 |
| 3R_11367384_SNP | CG18519 | NON_SYNONYMOUS_CODING | 7.63e-05 |
| 2L_1611896_SNP | CG14352 | INTRON | 7.65e-05 |
| 2L_1611896_SNP | RFeSP | INTRON | 7.65e-05 |
| X_12346699_SNP | Pkcdelta | INTRON | 7.65e-05 |
| 2R_19373299_SNP | CG43795 | INTRON | 7.69e-05 |
| 2L_14850088_SNP | CG15279 | INTRON | 7.76e-05 |
| 3R_12959441_SNP | CG31266 | UTR_3_PRIME | 7.84e-05 |
| 3R_12959441_SNP | CG31267 | UTR_3_PRIME | 7.84e-05 |
| 3R_12998775_SNP | Mur89F | INTRON | 7.88e-05 |
| 3R_11420305_SNP | 7.93e-05 | ||
| 2R_20305957_SNP | prom | INTRON | 7.95e-05 |
| 2L_5942852_SNP | Sfp26Ad | SYNONYMOUS_CODING | 7.99e-05 |
| 2L_5942852_SNP | CR45289 | SYNONYMOUS_CODING | 7.99e-05 |
| 3L_18019988_SNP | Eip75B | INTRON | 8.11e-05 |
| 3L_9933694_SNP | CG34356 | INTRON | 8.16e-05 |
| 2R_12628403_SNP | 8.20e-05 | ||
| 3R_9755255_SNP | 8.20e-05 | ||
| X_3945994_SNP | 8.25e-05 | ||
| 3R_6961146_SNP | 8.26e-05 | ||
| 2R_10221274_SNP | Shroom | INTRON | 8.41e-05 |
| 3R_12733232_SNP | iab-8 | INTRON | 8.42e-05 |
| 3R_12733233_SNP | iab-8 | INTRON | 8.42e-05 |
| 3R_12733519_SNP | iab-8 | INTRON | 8.42e-05 |
| 3R_11420324_SNP | 8.45e-05 | ||
| 2R_20275800_SNP | mAChR-A | INTRON | 8.46e-05 |
| 3R_14277461_SNP | fru | INTRON | 8.46e-05 |
| 2L_14861260_SNP | 8.49e-05 | ||
| X_3256422_SNP | 8.50e-05 | ||
| X_3256427_SNP | 8.50e-05 | ||
| 3L_7607016_SNP | CG33275 | INTRON | 8.52e-05 |
| 3L_9760566_SNP | CG8177 | INTRON | 8.56e-05 |
| 2R_16825523_SNP | Rx | DOWNSTREAM | 8.57e-05 |
| 3L_9933685_SNP | CG34356 | INTRON | 8.58e-05 |
| 3R_11424706_SNP | 8.60e-05 | ||
| 2R_3772109_INS | Dgk | INTRON | 8.63e-05 |
| 3R_12317718_SNP | Cad89D | SYNONYMOUS_CODING | 8.63e-05 |
| 2R_20261326_SNP | bs | INTRON | 8.69e-05 |
| 2R_20261326_SNP | tRNA:N5:60C | INTRON | 8.69e-05 |
| 3R_11387717_SNP | 8.69e-05 | ||
| X_14991448_SNP | Rab3-GEF | INTRON | 8.80e-05 |
| 2R_20284940_SNP | slik | SYNONYMOUS_CODING | 8.82e-05 |
| 2R_20260586_SNP | bs | INTRON | 8.86e-05 |
| 2R_20260586_SNP | tRNA:N5:60C | INTRON | 8.86e-05 |
| X_14993353_SNP | Rab3-GEF | INTRON | 8.87e-05 |
| 3L_14972722_INS | CG3349 | UTR_5_PRIME | 8.90e-05 |
| 3R_12996167_SNP | Mur89F | INTRON | 8.94e-05 |
| 3R_14287775_SNP | fru | INTRON | 8.94e-05 |
| 3R_11388712_SNP | 8.96e-05 | ||
| 2L_2782146_INS | Syt1 | UTR_3_PRIME | 8.98e-05 |
| X_14991551_SNP | Rab3-GEF | SYNONYMOUS_CODING | 9.04e-05 |
| 3L_15704758_SNP | 9.07e-05 | ||
| 2L_17027312_SNP | 9.09e-05 | ||
| 2L_4353069_SNP | CG15429 | SYNONYMOUS_CODING | 9.11e-05 |
| 3R_11292329_SNP | AdamTS-A | INTRON | 9.16e-05 |
| 2R_12559097_DEL | CG34457 | UTR_3_PRIME | 9.18e-05 |
| 2R_12559097_DEL | CG34458 | UTR_3_PRIME | 9.18e-05 |
| 2R_20276009_SNP | mAChR-A | INTRON | 9.18e-05 |
| 2L_14858849_SNP | 9.20e-05 | ||
| 2R_20264927_SNP | CG13578 | UPSTREAM | 9.20e-05 |
| 2R_20264927_SNP | bs | UPSTREAM | 9.20e-05 |
| 3L_12404345_SNP | CG32103 | INTRON | 9.20e-05 |
| 3R_12989856_SNP | Mur89F | INTRON | 9.22e-05 |
| X_19504387_DEL | CG14207 | INTRON | 9.33e-05 |
| 2R_10218531_SNP | Shroom | INTRON | 9.35e-05 |
| 2L_8325829_SNP | CG7781 | UPSTREAM | 9.38e-05 |
| 3L_17618385_SNP | CG7510 | INTRON | 9.38e-05 |
| 3R_13332029_SNP | Dscam3 | UPSTREAM | 9.38e-05 |
| 2R_3546887_SNP | CG1339 | SYNONYMOUS_CODING | 9.40e-05 |
| 2R_3546887_SNP | CG30495 | SYNONYMOUS_CODING | 9.40e-05 |
| 2R_16938611_SNP | shg | SYNONYMOUS_CODING | 9.41e-05 |
| 3R_12992033_SNP | Mur89F | INTRON | 9.45e-05 |
| 2L_9735509_SNP | Nckx30C | INTRON | 9.47e-05 |
| X_14991393_DEL | Rab3-GEF | INTRON | 9.47e-05 |
| 3R_11379202_SNP | CG18516 | UPSTREAM | 9.48e-05 |
| 2R_20277886_SNP | mAChR-A | UPSTREAM | 9.51e-05 |
| 2R_20277886_SNP | CR44813 | UPSTREAM | 9.51e-05 |
| 3R_11400817_SNP | 9.64e-05 | ||
| 2L_14839669_SNP | CR43805 | DOWNSTREAM | 9.70e-05 |
| 3R_11402209_SNP | 9.76e-05 | ||
| 3R_12996226_SNP | Mur89F | INTRON | 9.79e-05 |
| 3R_12396134_SNP | CG42342 | INTRON | 9.90e-05 |
| 3L_3684685_DEL | 9.93e-05 | ||
| 2L_21033767_SNP | CG42238 | INTRON | 9.98e-05 |
| 2R_8722614_SNP | 9.99e-05 |
5.4.2 Group count
| grps | n |
|---|---|
| INTRON | 185 |
| SYNONYMOUS_CODING | 40 |
| DOWNSTREAM | 27 |
| UPSTREAM | 20 |
| UTR_3_PRIME | 15 |
| NON_SYNONYMOUS_CODING | 12 |
| UTR_5_PRIME | 8 |
| EXON | 4 |
5.4.3 Gene counts
| gene | n |
|---|---|
| prom | 37 |
| Mur89F | 23 |
| bs | 20 |
| Rab3-GEF | 10 |
| CG18519 | 8 |
| CG45068 | 8 |
| CR43805 | 7 |
| CR44811 | 7 |
| CG45069 | 6 |
| mAChR-A | 5 |
| CG12268 | 4 |
| CG15279 | 4 |
| Dgk | 4 |
| slik | 4 |
| ago | 3 |
| CG1265 | 3 |
| CG6106 | 3 |
| CR32773 | 3 |
| iab-8 | 3 |
| 140up | 2 |
| AdamTS-A | 2 |
| CG12006 | 2 |
| CG15876 | 2 |
| CG34356 | 2 |
| CG43795 | 2 |
| CR44792 | 2 |
| EcR | 2 |
| fru | 2 |
| IntS6 | 2 |
| Lgr1 | 2 |
| RhoGEF64C | 2 |
| SerT | 2 |
| Shroom | 2 |
| Spn47C | 2 |
| tRNA:N5:60C | 2 |
| twf | 2 |
| ASPP | 1 |
| axo | 1 |
| BBS4 | 1 |
| Btk29A | 1 |
| bxd | 1 |
| Cad89D | 1 |
| capu | 1 |
| CG10960 | 1 |
| CG11073 | 1 |
| CG1339 | 1 |
| CG13578 | 1 |
| CG13739 | 1 |
| CG13954 | 1 |
| CG13992 | 1 |
| CG14010 | 1 |
| CG14207 | 1 |
| CG14285 | 1 |
| CG14286 | 1 |
| CG14352 | 1 |
| CG15395 | 1 |
| CG15429 | 1 |
| CG15661 | 1 |
| CG17047 | 1 |
| CG17265 | 1 |
| CG18516 | 1 |
| CG18522 | 1 |
| CG2065 | 1 |
| CG2070 | 1 |
| CG2316 | 1 |
| CG2556 | 1 |
| CG30389 | 1 |
| CG30460 | 1 |
| CG30495 | 1 |
| CG31266 | 1 |
| CG31267 | 1 |
| CG31296 | 1 |
| CG32103 | 1 |
| CG32758 | 1 |
| CG33275 | 1 |
| CG3349 | 1 |
| CG34295 | 1 |
| CG34457 | 1 |
| CG34458 | 1 |
| CG42238 | 1 |
| CG42342 | 1 |
| CG42383 | 1 |
| CG42389 | 1 |
| CG43373 | 1 |
| CG43759 | 1 |
| CG44434 | 1 |
| CG44435 | 1 |
| CG45263 | 1 |
| CG4629 | 1 |
| CG5361 | 1 |
| CG5550 | 1 |
| CG6126 | 1 |
| CG6424 | 1 |
| CG7510 | 1 |
| CG7781 | 1 |
| CG8006 | 1 |
| CG8012 | 1 |
| CG8086 | 1 |
| CG8177 | 1 |
| CG9864 | 1 |
| CG9981 | 1 |
| CHES-1-like | 1 |
| CR15280 | 1 |
| CR43417 | 1 |
| CR43804 | 1 |
| CR44151 | 1 |
| CR44499 | 1 |
| CR44535 | 1 |
| CR44789 | 1 |
| CR44813 | 1 |
| CR45289 | 1 |
| CR45641 | 1 |
| dar1 | 1 |
| Dscam3 | 1 |
| Eip75B | 1 |
| erm | 1 |
| Fili | 1 |
| Glut4EF | 1 |
| Gpdh | 1 |
| GstZ2 | 1 |
| ham | 1 |
| Hmgcr | 1 |
| intr | 1 |
| Jhe | 1 |
| mam | 1 |
| Menl-2 | 1 |
| Mp | 1 |
| msl-2 | 1 |
| Nckx30C | 1 |
| NetA | 1 |
| NPF | 1 |
| nuf | 1 |
| Obp85a | 1 |
| osa | 1 |
| Pdsw | 1 |
| Pkcdelta | 1 |
| Poc1 | 1 |
| psd | 1 |
| rad | 1 |
| rau | 1 |
| RFeSP | 1 |
| robo3 | 1 |
| Rx | 1 |
| Sema-2b | 1 |
| Sfp26Ad | 1 |
| shg | 1 |
| Sp1 | 1 |
| sr | 1 |
| sra | 1 |
| Syt1 | 1 |
| trio | 1 |
5.5 Thermal Breadth
5.5.1 All hits
| ID | gene | grps | AvgMixedPval |
|---|---|---|---|
| 3R_12992895_SNP | Mur89F | INTRON | 1.00e-07 |
| 2R_20313579_SNP | prom | INTRON | 6.00e-07 |
| 2R_20313579_SNP | CG42383 | INTRON | 6.00e-07 |
| 2R_7024700_SNP | BBS4 | SYNONYMOUS_CODING | 8.00e-07 |
| 3R_13900959_SNP | 1.30e-06 | ||
| 2R_20301097_SNP | CG45068 | SYNONYMOUS_CODING | 1.40e-06 |
| 2R_20301097_SNP | CG45069 | SYNONYMOUS_CODING | 1.40e-06 |
| 2R_20301239_SNP | CG45068 | NON_SYNONYMOUS_CODING | 1.40e-06 |
| 2R_20301239_SNP | CG45069 | NON_SYNONYMOUS_CODING | 1.40e-06 |
| 2L_2612712_SNP | 1.90e-06 | ||
| 3R_13552010_SNP | Lgr1 | INTRON | 3.00e-06 |
| 2R_20301123_SNP | CG45069 | UTR_5_PRIME | 3.30e-06 |
| 2R_20301123_SNP | CG45068 | UTR_5_PRIME | 3.30e-06 |
| 2R_20301091_SNP | CG45069 | UTR_5_PRIME | 3.40e-06 |
| 2R_20301091_SNP | CG45068 | UTR_5_PRIME | 3.40e-06 |
| 3R_5905483_SNP | 3.60e-06 | ||
| X_4385442_SNP | CR32773 | INTRON | 4.30e-06 |
| 3R_13552400_SNP | Lgr1 | INTRON | 4.50e-06 |
| 2L_20784197_SNP | 5.60e-06 | ||
| 2L_3465546_SNP | msl-2 | NON_SYNONYMOUS_CODING | 5.70e-06 |
| 2L_3465546_SNP | Pdsw | NON_SYNONYMOUS_CODING | 5.70e-06 |
| 3R_12991699_SNP | Mur89F | INTRON | 6.10e-06 |
| 3R_12990694_SNP | Mur89F | INTRON | 6.30e-06 |
| 3L_997191_SNP | trio | DOWNSTREAM | 6.60e-06 |
| 3R_4488005_SNP | p | SYNONYMOUS_CODING | 7.30e-06 |
| 3R_5901971_SNP | CG5361 | UPSTREAM | 7.30e-06 |
| X_18252257_DEL | CG6106 | UPSTREAM | 8.10e-06 |
| 2R_20250118_SNP | bs | INTRON | 9.40e-06 |
| 2R_20250118_SNP | CR44811 | INTRON | 9.40e-06 |
| X_5639729_SNP | IntS6 | INTRON | 9.60e-06 |
| 3L_7002933_SNP | Mp | INTRON | 1.01e-05 |
| 2R_17983519_SNP | CG11073 | INTRON | 1.10e-05 |
| 3R_4487071_SNP | p | NON_SYNONYMOUS_CODING | 1.11e-05 |
| 3R_4487071_SNP | bel | NON_SYNONYMOUS_CODING | 1.11e-05 |
| 2R_14565483_DEL | CG44434 | DOWNSTREAM | 1.15e-05 |
| 2R_14565483_DEL | CG44435 | DOWNSTREAM | 1.15e-05 |
| 2R_20308502_SNP | prom | INTRON | 1.18e-05 |
| 2R_17103833_SNP | CG15661 | SYNONYMOUS_CODING | 1.29e-05 |
| 3R_12997215_SNP | Mur89F | INTRON | 1.29e-05 |
| 3R_17312898_SNP | CG7922 | SYNONYMOUS_CODING | 1.31e-05 |
| 3R_12317718_SNP | Cad89D | SYNONYMOUS_CODING | 1.33e-05 |
| X_9640945_SNP | Sp1 | INTRON | 1.33e-05 |
| 2R_11082462_SNP | CG43829 | UPSTREAM | 1.39e-05 |
| 2L_14847936_SNP | CG15279 | INTRON | 1.40e-05 |
| 3R_4247244_SNP | CG45263 | INTRON | 1.45e-05 |
| 3R_4247244_SNP | Obp85a | INTRON | 1.45e-05 |
| 3R_12992188_SNP | Mur89F | INTRON | 1.48e-05 |
| X_18251508_DEL | 1.49e-05 | ||
| 2L_18774061_SNP | ham | INTRON | 1.53e-05 |
| 2L_18774061_SNP | CR43804 | INTRON | 1.53e-05 |
| 2R_20313919_SNP | prom | INTRON | 1.53e-05 |
| 3R_17312919_SNP | CG7922 | SYNONYMOUS_CODING | 1.60e-05 |
| 3R_12985727_SNP | Mur89F | INTRON | 1.63e-05 |
| 2L_2612282_INS | CG15395 | DOWNSTREAM | 1.65e-05 |
| 2R_20313917_SNP | prom | INTRON | 1.67e-05 |
| 2R_20313922_DEL | prom | INTRON | 1.67e-05 |
| 2R_20313930_SNP | prom | INTRON | 1.67e-05 |
| 2R_20313933_SNP | prom | INTRON | 1.67e-05 |
| 2R_20313935_INS | prom | INTRON | 1.67e-05 |
| 2R_20313938_SNP | prom | INTRON | 1.67e-05 |
| 2R_20313940_MNP | prom | INTRON | 1.67e-05 |
| 2R_20308565_SNP | prom | INTRON | 1.69e-05 |
| X_18251504_SNP | 1.69e-05 | ||
| X_18251505_SNP | 1.69e-05 | ||
| 3L_4694906_SNP | RhoGEF64C | INTRON | 1.71e-05 |
| 3L_4694906_SNP | CG15876 | INTRON | 1.71e-05 |
| 2R_17037739_INS | CG30389 | INTRON | 1.72e-05 |
| 2R_1991490_SNP | EcR | INTRON | 1.85e-05 |
| 2R_1991491_SNP | EcR | INTRON | 1.85e-05 |
| 3L_12833443_SNP | CG10960 | INTRON | 1.87e-05 |
| 2L_7751402_SNP | CG7203 | DOWNSTREAM | 1.91e-05 |
| 3R_22095003_SNP | CG6154 | INTRON | 1.91e-05 |
| 2R_20308558_SNP | prom | INTRON | 1.92e-05 |
| 2L_9792840_SNP | CG13123 | INTRON | 1.93e-05 |
| 2L_9792840_SNP | nAChRalpha6 | INTRON | 1.93e-05 |
| 3L_5853164_SNP | 1.96e-05 | ||
| 3R_12992004_SNP | Mur89F | INTRON | 2.03e-05 |
| 2R_5227902_SNP | CG13954 | INTRON | 2.05e-05 |
| 2R_5227902_SNP | CG13739 | INTRON | 2.05e-05 |
| 2R_3551128_SNP | CG2065 | UPSTREAM | 2.07e-05 |
| 2R_3551128_SNP | CG2070 | UPSTREAM | 2.07e-05 |
| 2R_3546887_SNP | CG1339 | SYNONYMOUS_CODING | 2.09e-05 |
| 2R_3546887_SNP | CG30495 | SYNONYMOUS_CODING | 2.09e-05 |
| X_14994016_SNP | Rab3-GEF | SYNONYMOUS_CODING | 2.11e-05 |
| X_9641804_SNP | Sp1 | INTRON | 2.12e-05 |
| 3R_19565063_SNP | Hmgcr | INTRON | 2.13e-05 |
| 2R_20313914_SNP | prom | INTRON | 2.16e-05 |
| 2R_20313927_SNP | prom | INTRON | 2.16e-05 |
| X_9641643_SNP | Sp1 | INTRON | 2.17e-05 |
| 3R_9755267_SNP | 2.25e-05 | ||
| 3R_9949217_SNP | twf | SYNONYMOUS_CODING | 2.25e-05 |
| 3R_9949217_SNP | 140up | SYNONYMOUS_CODING | 2.25e-05 |
| X_12403029_SNP | CG2556 | INTRON | 2.26e-05 |
| 3L_4694662_SNP | CG15876 | SYNONYMOUS_CODING | 2.27e-05 |
| 3L_4694662_SNP | RhoGEF64C | SYNONYMOUS_CODING | 2.27e-05 |
| 2R_20308533_SNP | prom | INTRON | 2.30e-05 |
| X_9641727_SNP | Sp1 | INTRON | 2.31e-05 |
| 3R_11367299_SNP | CG18519 | NON_SYNONYMOUS_CODING | 2.32e-05 |
| 3R_13448666_DEL | tRNA:CR33534 | DOWNSTREAM | 2.37e-05 |
| 3R_13448666_DEL | CG14323 | DOWNSTREAM | 2.37e-05 |
| 3L_8696154_SNP | 2.44e-05 | ||
| 2R_20313916_SNP | prom | INTRON | 2.46e-05 |
| X_7604829_INS | 2.52e-05 | ||
| 3L_3844015_SNP | 2.63e-05 | ||
| 3R_12992053_DEL | Mur89F | INTRON | 2.66e-05 |
| 2R_20309106_SNP | prom | INTRON | 2.67e-05 |
| 3R_12997318_SNP | Mur89F | INTRON | 2.67e-05 |
| 2L_9508608_SNP | CG33298 | INTRON | 2.71e-05 |
| 2L_1964167_SNP | erm | INTRON | 2.72e-05 |
| 3L_16725026_SNP | 2.81e-05 | ||
| 3R_12992010_SNP | Mur89F | INTRON | 2.85e-05 |
| 2R_20313911_SNP | prom | INTRON | 2.86e-05 |
| X_18167373_DEL | 2.88e-05 | ||
| 3R_13418241_SNP | 2.89e-05 | ||
| 3R_24617170_SNP | intr | UTR_3_PRIME | 2.93e-05 |
| 3R_24617170_SNP | CG34295 | UTR_3_PRIME | 2.93e-05 |
| X_6297829_SNP | 2.93e-05 | ||
| 3R_9755266_SNP | 2.97e-05 | ||
| 3R_11388164_SNP | 2.99e-05 | ||
| 2R_12230279_SNP | CG7997 | INTRON | 3.02e-05 |
| X_13151875_SNP | mew | INTRON | 3.03e-05 |
| X_13151875_SNP | CG15742 | INTRON | 3.03e-05 |
| 2R_8502479_SNP | CG45086 | INTRON | 3.05e-05 |
| 2R_8502479_SNP | Galphaq | INTRON | 3.05e-05 |
| 3L_4694850_SNP | RhoGEF64C | INTRON | 3.07e-05 |
| 3L_4694850_SNP | CG15876 | INTRON | 3.07e-05 |
| 3R_12992033_SNP | Mur89F | INTRON | 3.07e-05 |
| 2L_3885863_SNP | capu | INTRON | 3.08e-05 |
| 2R_7752530_SNP | CG42531 | DOWNSTREAM | 3.09e-05 |
| 2R_7752530_SNP | Damm | DOWNSTREAM | 3.09e-05 |
| 2L_7751417_SNP | CG7203 | DOWNSTREAM | 3.10e-05 |
| 2L_5964548_SNP | psd | INTRON | 3.13e-05 |
| 2L_5964548_SNP | CG13992 | INTRON | 3.13e-05 |
| 3R_13900177_SNP | 3.14e-05 | ||
| 3R_13131971_SNP | 3.19e-05 | ||
| X_18167335_SNP | 3.19e-05 | ||
| X_7587146_DEL | CHES-1-like | INTRON | 3.36e-05 |
| X_3376568_SNP | CR44999 | INTRON | 3.38e-05 |
| X_3376568_SNP | CG10804 | INTRON | 3.38e-05 |
| 2R_20263548_SNP | bs | UTR_3_PRIME | 3.40e-05 |
| 2L_7751376_SNP | CG7203 | DOWNSTREAM | 3.41e-05 |
| 2L_7751399_SNP | CG7203 | DOWNSTREAM | 3.42e-05 |
| 2R_12628367_SNP | 3.46e-05 | ||
| 2R_7023942_SNP | BBS4 | INTRON | 3.50e-05 |
| 2R_7023949_SNP | BBS4 | INTRON | 3.50e-05 |
| 2R_7023958_SNP | BBS4 | INTRON | 3.50e-05 |
| 2R_7023976_SNP | BBS4 | INTRON | 3.50e-05 |
| 3R_17309679_SNP | CG7922 | NON_SYNONYMOUS_CODING | 3.50e-05 |
| 2R_12369476_SNP | 3.52e-05 | ||
| X_18251526_SNP | 3.53e-05 | ||
| 3R_4313545_SNP | 3.54e-05 | ||
| 2L_5867252_SNP | rau | INTRON | 3.61e-05 |
| 3R_13524790_SNP | osa | INTRON | 3.61e-05 |
| X_14993421_SNP | Rab3-GEF | INTRON | 3.63e-05 |
| 2R_20263633_SNP | bs | UTR_3_PRIME | 3.71e-05 |
| 3R_13332029_SNP | Dscam3 | UPSTREAM | 3.71e-05 |
| X_7588127_SNP | CHES-1-like | INTRON | 3.74e-05 |
| 3R_11364111_SNP | CG18519 | SYNONYMOUS_CODING | 3.75e-05 |
| X_18251390_SNP | 3.75e-05 | ||
| 2R_20307893_SNP | prom | NON_SYNONYMOUS_CODING | 3.76e-05 |
| 3R_12435590_SNP | NPF | INTRON | 3.76e-05 |
| 3R_19770578_SNP | CG12268 | INTRON | 3.84e-05 |
| 3R_19770583_SNP | CG12268 | INTRON | 3.84e-05 |
| 3R_19770588_SNP | CG12268 | INTRON | 3.84e-05 |
| 3L_2294717_SNP | MsR2 | INTRON | 3.86e-05 |
| 3R_11129613_SNP | Tm1 | INTRON | 3.90e-05 |
| X_6297782_SNP | 3.98e-05 | ||
| 3R_5824500_SNP | Spn85F | NON_SYNONYMOUS_CODING | 3.99e-05 |
| 3R_5824500_SNP | CG5359 | NON_SYNONYMOUS_CODING | 3.99e-05 |
| X_18252264_SNP | CG6106 | UPSTREAM | 4.04e-05 |
| X_5631703_INS | CG32758 | UTR_5_PRIME | 4.04e-05 |
| X_5631703_INS | IntS6 | UTR_5_PRIME | 4.04e-05 |
| 3R_10655623_SNP | btsz | INTRON | 4.07e-05 |
| 2L_7751543_DEL | CG7203 | DOWNSTREAM | 4.08e-05 |
| 3L_2293540_SNP | MsR2 | INTRON | 4.09e-05 |
| 2R_12628349_SNP | 4.11e-05 | ||
| 3R_13002842_SNP | Mur89F | INTRON | 4.12e-05 |
| 2R_12218440_SNP | Vha44 | INTRON | 4.14e-05 |
| 3R_22094891_DEL | CG6154 | INTRON | 4.17e-05 |
| 4_212564_SNP | CG2316 | INTRON | 4.17e-05 |
| 3R_11288771_SNP | AdamTS-A | INTRON | 4.21e-05 |
| 3L_3812775_SNP | CG12006 | SYNONYMOUS_CODING | 4.23e-05 |
| 2R_7752475_SNP | CG42531 | DOWNSTREAM | 4.24e-05 |
| 2R_7752475_SNP | Damm | DOWNSTREAM | 4.24e-05 |
| 2R_8722614_SNP | 4.28e-05 | ||
| X_18252738_DEL | CG6106 | UPSTREAM | 4.28e-05 |
| X_18252748_SNP | CG6106 | UPSTREAM | 4.28e-05 |
| X_18251456_SNP | 4.32e-05 | ||
| 2R_20309964_SNP | prom | INTRON | 4.33e-05 |
| 2R_12628403_SNP | 4.36e-05 | ||
| 2R_20263506_SNP | bs | NON_SYNONYMOUS_CODING | 4.36e-05 |
| 2R_20263738_SNP | bs | UTR_3_PRIME | 4.36e-05 |
| 2R_20263740_INS | bs | UTR_3_PRIME | 4.36e-05 |
| 2R_20263742_SNP | bs | UTR_3_PRIME | 4.36e-05 |
| 2R_20309307_SNP | prom | INTRON | 4.37e-05 |
| X_14994013_SNP | Rab3-GEF | SYNONYMOUS_CODING | 4.37e-05 |
| X_14994019_SNP | Rab3-GEF | SYNONYMOUS_CODING | 4.37e-05 |
| 2R_2998199_SNP | esn | INTRON | 4.46e-05 |
| 3R_22081036_SNP | Ald | DOWNSTREAM | 4.46e-05 |
| 2R_20301145_SNP | CG45068 | SYNONYMOUS_CODING | 4.47e-05 |
| 2R_20301145_SNP | CG45069 | SYNONYMOUS_CODING | 4.47e-05 |
| 3L_6639773_SNP | 4.47e-05 | ||
| 2R_20313912_SNP | prom | INTRON | 4.51e-05 |
| 3L_14197669_SNP | nuf | INTRON | 4.54e-05 |
| 3L_14197669_SNP | CG32141 | INTRON | 4.54e-05 |
| X_4985802_SNP | CG15465 | INTRON | 4.56e-05 |
| X_4985802_SNP | rg | INTRON | 4.56e-05 |
| 3L_3329652_SNP | CR45380 | DOWNSTREAM | 4.62e-05 |
| 3L_3329652_SNP | CG14961 | DOWNSTREAM | 4.62e-05 |
| 3R_13419831_SNP | CG7587 | UPSTREAM | 4.63e-05 |
| 2R_16825523_SNP | Rx | DOWNSTREAM | 4.64e-05 |
| 3R_14850882_SNP | CG14285 | NON_SYNONYMOUS_CODING | 4.64e-05 |
| 3R_14850882_SNP | CG14286 | NON_SYNONYMOUS_CODING | 4.64e-05 |
| 3L_3812970_SNP | CG12006 | SYNONYMOUS_CODING | 4.66e-05 |
| 2L_3396579_SNP | CR44792 | DOWNSTREAM | 4.67e-05 |
| 3R_17309591_SNP | CG7922 | INTRON | 4.67e-05 |
| 3R_17314258_DEL | 4.68e-05 | ||
| X_12899932_SNP | rad | INTRON | 4.68e-05 |
| X_4986248_DEL | CG15465 | INTRON | 4.74e-05 |
| X_4986248_DEL | rg | INTRON | 4.74e-05 |
| 2R_20269748_SNP | mAChR-A | INTRON | 4.79e-05 |
| 2L_16699438_SNP | grp | NON_SYNONYMOUS_CODING | 4.81e-05 |
| 2L_16699438_SNP | CR43669 | NON_SYNONYMOUS_CODING | 4.81e-05 |
| 2R_12451205_DEL | DAT | INTRON | 4.81e-05 |
| 3L_7607016_SNP | CG33275 | INTRON | 4.82e-05 |
| 3R_9755264_SNP | 4.83e-05 | ||
| 2L_1611896_SNP | CG14352 | INTRON | 4.85e-05 |
| 2L_1611896_SNP | RFeSP | INTRON | 4.85e-05 |
| 2R_14222653_DEL | sbb | INTRON | 4.87e-05 |
| 2L_3396577_SNP | CR44792 | DOWNSTREAM | 4.89e-05 |
| 3L_14092468_SNP | 4.89e-05 | ||
| 3R_10974341_SNP | 4.94e-05 | ||
| X_5656121_SNP | MAPk-Ak2 | INTRON | 4.94e-05 |
| 3L_9760566_SNP | CG8177 | INTRON | 4.96e-05 |
| X_20907278_SNP | Ntf-2 | INTRON | 4.97e-05 |
| X_20907279_SNP | Ntf-2 | INTRON | 4.97e-05 |
| 3R_17309145_SNP | CG7922 | SYNONYMOUS_CODING | 4.98e-05 |
| 2R_20313730_SNP | prom | INTRON | 5.01e-05 |
| 2L_2592883_SNP | CG15394 | DOWNSTREAM | 5.04e-05 |
| 3L_14188075_SNP | nuf | INTRON | 5.09e-05 |
| X_18167332_SNP | 5.14e-05 | ||
| 3R_17313012_SNP | CG7922 | DOWNSTREAM | 5.15e-05 |
| 2L_2612781_DEL | 5.21e-05 | ||
| 2R_1618770_SNP | 5.26e-05 | ||
| X_14993547_SNP | Rab3-GEF | INTRON | 5.29e-05 |
| 2L_14087933_SNP | nAChRalpha5 | INTRON | 5.32e-05 |
| 2L_3013371_SNP | CG17265 | INTRON | 5.32e-05 |
| X_18251495_SNP | 5.38e-05 | ||
| 3L_10374559_INS | 5.47e-05 | ||
| 3L_12404345_SNP | CG32103 | INTRON | 5.48e-05 |
| 2R_16825517_SNP | Rx | DOWNSTREAM | 5.52e-05 |
| 2R_20260408_SNP | bs | INTRON | 5.60e-05 |
| 3R_13421753_SNP | Sgs5 | UTR_3_PRIME | 5.63e-05 |
| 3R_13421753_SNP | CG7606 | UTR_3_PRIME | 5.63e-05 |
| 2L_2612787_SNP | 5.66e-05 | ||
| 2R_3769346_SNP | Dgk | UTR_5_PRIME | 5.66e-05 |
| X_7587379_SNP | CHES-1-like | INTRON | 5.67e-05 |
| 3L_13974741_SNP | CG17364 | INTRON | 5.74e-05 |
| X_5908964_SNP | CR44499 | DOWNSTREAM | 5.74e-05 |
| 3R_12985703_SNP | Mur89F | INTRON | 5.79e-05 |
| X_14994112_SNP | Rab3-GEF | SYNONYMOUS_CODING | 5.81e-05 |
| 2R_19645190_SNP | CG9850 | INTRON | 5.82e-05 |
| X_9641716_SNP | Sp1 | INTRON | 5.85e-05 |
| 3R_3439387_SNP | CG34127 | INTRON | 5.86e-05 |
| 3R_12317562_SNP | Cad89D | INTRON | 5.91e-05 |
| 3R_12317613_SNP | Cad89D | SYNONYMOUS_CODING | 5.91e-05 |
| X_9640876_SNP | Sp1 | INTRON | 5.92e-05 |
| X_9640960_SNP | Sp1 | INTRON | 5.92e-05 |
| 2R_11632091_SNP | CG30089 | INTRON | 5.98e-05 |
| 3R_13332023_DEL | Dscam3 | UPSTREAM | 6.02e-05 |
| 3L_12544228_SNP | sowah | INTRON | 6.04e-05 |
| 3R_10974468_SNP | 6.10e-05 | ||
| 3R_19565035_SNP | Hmgcr | INTRON | 6.10e-05 |
| 3R_19565036_SNP | Hmgcr | INTRON | 6.10e-05 |
| 2R_20233630_SNP | bs | INTRON | 6.16e-05 |
| 2R_19022154_SNP | 6.27e-05 | ||
| 2R_20280846_SNP | slik | DOWNSTREAM | 6.27e-05 |
| 3L_13935202_SNP | CG32137 | INTRON | 6.35e-05 |
| X_9210165_SNP | CR44534 | DOWNSTREAM | 6.36e-05 |
| 2R_19551513_SNP | Pde8 | INTRON | 6.37e-05 |
| X_6443825_SNP | CG34417 | INTRON | 6.44e-05 |
| X_6444241_SNP | CG34417 | INTRON | 6.44e-05 |
| X_6446431_SNP | CG34417 | INTRON | 6.44e-05 |
| 3L_18019988_SNP | Eip75B | INTRON | 6.45e-05 |
| 3R_9949202_SNP | twf | SYNONYMOUS_CODING | 6.45e-05 |
| 3R_9949202_SNP | 140up | SYNONYMOUS_CODING | 6.45e-05 |
| 2R_7402770_SNP | 6.47e-05 | ||
| 3R_12985546_SNP | Mur89F | SYNONYMOUS_CODING | 6.50e-05 |
| X_3945990_SNP | 6.50e-05 | ||
| 3R_17313053_SNP | CG7922 | DOWNSTREAM | 6.52e-05 |
| 3R_12992392_SNP | Mur89F | INTRON | 6.53e-05 |
| 2R_11082631_SNP | CG43829 | UPSTREAM | 6.56e-05 |
| X_4986299_SNP | rg | INTRON | 6.56e-05 |
| X_4986299_SNP | CG15465 | INTRON | 6.56e-05 |
| 2L_5613850_SNP | CG14010 | INTRON | 6.58e-05 |
| 2R_20276009_SNP | mAChR-A | INTRON | 6.63e-05 |
| 3L_17773480_SNP | 6.66e-05 | ||
| 3R_12992032_SNP | Mur89F | INTRON | 6.69e-05 |
| X_14518598_SNP | NetA | INTRON | 6.73e-05 |
| 2L_14847382_SNP | CG15279 | INTRON | 6.75e-05 |
| 2R_7419910_SNP | 6.80e-05 | ||
| X_4986296_DEL | rg | INTRON | 6.85e-05 |
| X_4986296_DEL | CG15465 | INTRON | 6.85e-05 |
| 3R_10655781_SNP | btsz | INTRON | 6.88e-05 |
| 2R_12696827_SNP | 7.02e-05 | ||
| 2R_20263539_SNP | bs | UTR_3_PRIME | 7.04e-05 |
| 3R_13928920_SNP | sr | INTRON | 7.14e-05 |
| 2L_9962482_SNP | CG5850 | SYNONYMOUS_CODING | 7.15e-05 |
| 2L_9962482_SNP | CR43683 | SYNONYMOUS_CODING | 7.15e-05 |
| 2R_17103509_SNP | CG15661 | SYNONYMOUS_CODING | 7.15e-05 |
| 3R_17772582_SNP | 7.17e-05 | ||
| 3R_12993769_SNP | Mur89F | INTRON | 7.24e-05 |
| 4_214743_SNP | CG2316 | UPSTREAM | 7.30e-05 |
| 4_214743_SNP | CR44441 | UPSTREAM | 7.30e-05 |
| X_14991195_SNP | Rab3-GEF | INTRON | 7.35e-05 |
| 2R_7266548_SNP | Tsp47F | UTR_5_PRIME | 7.37e-05 |
| 3R_19770553_SNP | CG12268 | INTRON | 7.39e-05 |
| 3L_13379241_SNP | CG10171 | UTR_3_PRIME | 7.40e-05 |
| 3L_13379241_SNP | CG14110 | UTR_3_PRIME | 7.40e-05 |
| 2L_4353069_SNP | CG15429 | SYNONYMOUS_CODING | 7.44e-05 |
| 2R_20276477_SNP | mAChR-A | INTRON | 7.47e-05 |
| 2L_14858849_SNP | 7.48e-05 | ||
| X_3945994_SNP | 7.48e-05 | ||
| X_4883035_SNP | CR44833 | INTRON | 7.48e-05 |
| 2R_10963284_SNP | 7.49e-05 | ||
| 2L_5684156_SNP | 7.51e-05 | ||
| 2L_1611892_SNP | CG14352 | INTRON | 7.54e-05 |
| 2L_1611892_SNP | RFeSP | INTRON | 7.54e-05 |
| 3R_3350035_SNP | alpha-Est6 | DOWNSTREAM | 7.54e-05 |
| 3R_3350035_SNP | alpha-Est7 | DOWNSTREAM | 7.54e-05 |
| X_13400492_SNP | Neto | INTRON | 7.54e-05 |
| 2R_20275800_SNP | mAChR-A | INTRON | 7.55e-05 |
| 3R_22094885_SNP | CG6154 | INTRON | 7.57e-05 |
| 2R_9208823_SNP | 7.61e-05 | ||
| 3L_14070418_SNP | btl | INTRON | 7.63e-05 |
| 3R_12996262_SNP | Mur89F | INTRON | 7.65e-05 |
| 3R_17309666_SNP | CG7922 | INTRON | 7.70e-05 |
| 3R_9755213_SNP | 7.77e-05 | ||
| 2L_14839600_SNP | CR43805 | DOWNSTREAM | 7.85e-05 |
| 3L_13381805_SNP | Poc1 | INTRON | 7.88e-05 |
| 3L_13381805_SNP | CG10171 | INTRON | 7.88e-05 |
| X_14993353_SNP | Rab3-GEF | INTRON | 7.90e-05 |
| X_13403437_SNP | Neto | INTRON | 8.03e-05 |
| 2R_2589702_SNP | CG45092 | INTRON | 8.11e-05 |
| 2R_2589702_SNP | CG3409 | INTRON | 8.11e-05 |
| 2L_14839629_INS | CR43805 | DOWNSTREAM | 8.12e-05 |
| 3L_7002948_SNP | Mp | INTRON | 8.12e-05 |
| 2R_20270526_SNP | mAChR-A | INTRON | 8.25e-05 |
| 2L_5942852_SNP | Sfp26Ad | SYNONYMOUS_CODING | 8.31e-05 |
| 2L_5942852_SNP | CR45289 | SYNONYMOUS_CODING | 8.31e-05 |
| X_9641740_SNP | Sp1 | INTRON | 8.32e-05 |
| 2L_8590036_SNP | Sema-1a | INTRON | 8.33e-05 |
| 2L_8590036_SNP | CR43855 | INTRON | 8.33e-05 |
| 3R_3453798_SNP | CG34127 | INTRON | 8.35e-05 |
| 3R_3453798_SNP | CR44332 | INTRON | 8.35e-05 |
| 4_216261_SNP | CR44441 | EXON | 8.38e-05 |
| 2L_3233946_SNP | 8.43e-05 | ||
| 2L_8325829_SNP | CG7781 | UPSTREAM | 8.44e-05 |
| 3R_17307710_SNP | CG7922 | UPSTREAM | 8.47e-05 |
| 3L_6639868_SNP | 8.62e-05 | ||
| 2R_19551586_SNP | Pde8 | INTRON | 8.63e-05 |
| 2L_3121567_SNP | toc | INTRON | 8.68e-05 |
| 2L_5964588_SNP | psd | INTRON | 8.69e-05 |
| 2L_5964588_SNP | CG13992 | INTRON | 8.69e-05 |
| 2L_6133846_SNP | CR45719 | UPSTREAM | 8.74e-05 |
| 2L_9810997_SNP | nAChRalpha6 | INTRON | 8.74e-05 |
| 2L_9811000_SNP | nAChRalpha6 | INTRON | 8.74e-05 |
| 3L_13383636_SNP | Poc1 | UPSTREAM | 8.77e-05 |
| X_7585641_SNP | CHES-1-like | INTRON | 8.81e-05 |
| 3R_17961180_SNP | SKIP | INTRON | 8.88e-05 |
| X_4533152_SNP | pon | DOWNSTREAM | 8.92e-05 |
| X_4533152_SNP | CG3081 | DOWNSTREAM | 8.92e-05 |
| 2R_16711423_SNP | insc | SYNONYMOUS_CODING | 8.93e-05 |
| 2L_9962445_SNP | CG5850 | INTRON | 9.04e-05 |
| 2L_9962445_SNP | CR43683 | INTRON | 9.04e-05 |
| X_14993974_SNP | Rab3-GEF | SYNONYMOUS_CODING | 9.06e-05 |
| 3L_2293647_SNP | MsR2 | INTRON | 9.08e-05 |
| 3R_5916394_SNP | CR45054 | DOWNSTREAM | 9.08e-05 |
| 3R_5916394_SNP | mir-317 | DOWNSTREAM | 9.08e-05 |
| 3R_7317976_SNP | 9.08e-05 | ||
| 3R_17313134_SNP | CG7922 | DOWNSTREAM | 9.11e-05 |
| 3R_5851098_SNP | Mical | INTRON | 9.16e-05 |
| 3R_5851098_SNP | CG31407 | INTRON | 9.16e-05 |
| 2R_12835148_SNP | Vha16-4 | DOWNSTREAM | 9.17e-05 |
| 2R_12835148_SNP | CG34190 | DOWNSTREAM | 9.17e-05 |
| 3R_5285535_SNP | GstZ2 | INTRON | 9.18e-05 |
| 3R_9755225_SNP | 9.19e-05 | ||
| X_7585423_SNP | CHES-1-like | INTRON | 9.23e-05 |
| 3R_13434002_SNP | sll | SYNONYMOUS_CODING | 9.28e-05 |
| 3R_13434033_SNP | sll | UTR_3_PRIME | 9.28e-05 |
| 2R_20257613_SNP | bs | INTRON | 9.30e-05 |
| 2R_20257613_SNP | CR44811 | INTRON | 9.30e-05 |
| 2L_17966311_SNP | CG5674 | INTRON | 9.31e-05 |
| 2L_17966311_SNP | btv | INTRON | 9.31e-05 |
| 3R_25873501_SNP | CG7943 | SYNONYMOUS_CODING | 9.31e-05 |
| 3R_25873501_SNP | CG15528 | SYNONYMOUS_CODING | 9.31e-05 |
| 2L_7751378_SNP | CG7203 | DOWNSTREAM | 9.33e-05 |
| 3R_20707017_SNP | CG11089 | UTR_3_PRIME | 9.35e-05 |
| 3R_20707017_SNP | CG31121 | UTR_3_PRIME | 9.35e-05 |
| 3R_7994186_SNP | 9.36e-05 | ||
| 4_217807_DEL | CG31998 | DOWNSTREAM | 9.40e-05 |
| X_4985793_MNP | rg | INTRON | 9.40e-05 |
| X_4985793_MNP | CG15465 | INTRON | 9.40e-05 |
| 2L_3427281_SNP | pgant2 | UPSTREAM | 9.43e-05 |
| 3L_12404239_SNP | CG32103 | INTRON | 9.45e-05 |
| 2R_3525595_SNP | CG43340 | INTRON | 9.47e-05 |
| 3R_5721722_SNP | Glut4EF | INTRON | 9.56e-05 |
| 2R_11006133_SNP | chn | INTRON | 9.60e-05 |
| 2L_16629322_SNP | CG42389 | INTRON | 9.61e-05 |
| 2L_16629322_SNP | CR44151 | INTRON | 9.61e-05 |
| X_7585873_SNP | CHES-1-like | INTRON | 9.63e-05 |
| 2R_3772313_SNP | Dgk | INTRON | 9.68e-05 |
| 2L_7008310_SNP | uif | INTRON | 9.69e-05 |
| 2L_14847378_SNP | CG15279 | INTRON | 9.70e-05 |
| 3R_12996121_SNP | Mur89F | INTRON | 9.76e-05 |
| 2R_16875395_SNP | CG3216 | SYNONYMOUS_CODING | 9.77e-05 |
| 2R_20280640_SNP | slik | DOWNSTREAM | 9.79e-05 |
| 3R_9585922_SNP | CG34383 | INTRON | 9.90e-05 |
| 3R_17313074_SNP | CG7922 | DOWNSTREAM | 9.93e-05 |
| 2L_14849398_SNP | CG15279 | INTRON | 9.95e-05 |
| 2L_2601212_SNP | CR44789 | EXON | 9.95e-05 |
5.5.2 Group count
| grps | n |
|---|---|
| INTRON | 217 |
| DOWNSTREAM | 43 |
| SYNONYMOUS_CODING | 40 |
| UPSTREAM | 19 |
| NON_SYNONYMOUS_CODING | 16 |
| UTR_3_PRIME | 15 |
| UTR_5_PRIME | 8 |
| EXON | 2 |
5.5.3 Gene counts
| gene | n |
|---|---|
| prom | 23 |
| Mur89F | 19 |
| bs | 11 |
| CG7922 | 11 |
| Rab3-GEF | 9 |
| Sp1 | 8 |
| CG7203 | 6 |
| CHES-1-like | 6 |
| BBS4 | 5 |
| CG15465 | 5 |
| CG45068 | 5 |
| CG45069 | 5 |
| mAChR-A | 5 |
| rg | 5 |
| CG12268 | 4 |
| CG15279 | 4 |
| CG6106 | 4 |
| Cad89D | 3 |
| CG15876 | 3 |
| CG34417 | 3 |
| CG6154 | 3 |
| Hmgcr | 3 |
| MsR2 | 3 |
| nAChRalpha6 | 3 |
| RhoGEF64C | 3 |
| 140up | 2 |
| btsz | 2 |
| CG10171 | 2 |
| CG12006 | 2 |
| CG13992 | 2 |
| CG14352 | 2 |
| CG15661 | 2 |
| CG18519 | 2 |
| CG2316 | 2 |
| CG32103 | 2 |
| CG34127 | 2 |
| CG42531 | 2 |
| CG43829 | 2 |
| CG5850 | 2 |
| CR43683 | 2 |
| CR43805 | 2 |
| CR44441 | 2 |
| CR44792 | 2 |
| CR44811 | 2 |
| Damm | 2 |
| Dgk | 2 |
| Dscam3 | 2 |
| EcR | 2 |
| IntS6 | 2 |
| Lgr1 | 2 |
| Mp | 2 |
| Neto | 2 |
| Ntf-2 | 2 |
| nuf | 2 |
| p | 2 |
| Pde8 | 2 |
| Poc1 | 2 |
| psd | 2 |
| RFeSP | 2 |
| Rx | 2 |
| slik | 2 |
| sll | 2 |
| twf | 2 |
| AdamTS-A | 1 |
| Ald | 1 |
| alpha-Est6 | 1 |
| alpha-Est7 | 1 |
| bel | 1 |
| btl | 1 |
| btv | 1 |
| capu | 1 |
| CG10804 | 1 |
| CG10960 | 1 |
| CG11073 | 1 |
| CG11089 | 1 |
| CG13123 | 1 |
| CG1339 | 1 |
| CG13739 | 1 |
| CG13954 | 1 |
| CG14010 | 1 |
| CG14110 | 1 |
| CG14285 | 1 |
| CG14286 | 1 |
| CG14323 | 1 |
| CG14961 | 1 |
| CG15394 | 1 |
| CG15395 | 1 |
| CG15429 | 1 |
| CG15528 | 1 |
| CG15742 | 1 |
| CG17265 | 1 |
| CG17364 | 1 |
| CG2065 | 1 |
| CG2070 | 1 |
| CG2556 | 1 |
| CG30089 | 1 |
| CG30389 | 1 |
| CG30495 | 1 |
| CG3081 | 1 |
| CG31121 | 1 |
| CG31407 | 1 |
| CG31998 | 1 |
| CG32137 | 1 |
| CG32141 | 1 |
| CG3216 | 1 |
| CG32758 | 1 |
| CG33275 | 1 |
| CG33298 | 1 |
| CG3409 | 1 |
| CG34190 | 1 |
| CG34295 | 1 |
| CG34383 | 1 |
| CG42383 | 1 |
| CG42389 | 1 |
| CG43340 | 1 |
| CG44434 | 1 |
| CG44435 | 1 |
| CG45086 | 1 |
| CG45092 | 1 |
| CG45263 | 1 |
| CG5359 | 1 |
| CG5361 | 1 |
| CG5674 | 1 |
| CG7587 | 1 |
| CG7606 | 1 |
| CG7781 | 1 |
| CG7943 | 1 |
| CG7997 | 1 |
| CG8177 | 1 |
| CG9850 | 1 |
| chn | 1 |
| CR32773 | 1 |
| CR43669 | 1 |
| CR43804 | 1 |
| CR43855 | 1 |
| CR44151 | 1 |
| CR44332 | 1 |
| CR44499 | 1 |
| CR44534 | 1 |
| CR44789 | 1 |
| CR44833 | 1 |
| CR44999 | 1 |
| CR45054 | 1 |
| CR45289 | 1 |
| CR45380 | 1 |
| CR45719 | 1 |
| DAT | 1 |
| Eip75B | 1 |
| erm | 1 |
| esn | 1 |
| Galphaq | 1 |
| Glut4EF | 1 |
| grp | 1 |
| GstZ2 | 1 |
| ham | 1 |
| insc | 1 |
| intr | 1 |
| MAPk-Ak2 | 1 |
| mew | 1 |
| Mical | 1 |
| mir-317 | 1 |
| msl-2 | 1 |
| nAChRalpha5 | 1 |
| NetA | 1 |
| NPF | 1 |
| Obp85a | 1 |
| osa | 1 |
| Pdsw | 1 |
| pgant2 | 1 |
| pon | 1 |
| rad | 1 |
| rau | 1 |
| sbb | 1 |
| Sema-1a | 1 |
| Sfp26Ad | 1 |
| Sgs5 | 1 |
| SKIP | 1 |
| sowah | 1 |
| Spn85F | 1 |
| sr | 1 |
| Tm1 | 1 |
| toc | 1 |
| trio | 1 |
| tRNA:CR33534 | 1 |
| Tsp47F | 1 |
| uif | 1 |
| Vha16-4 | 1 |
| Vha44 | 1 |
6 Phenotypes
6.1 CTmin
6.2 CTmax
6.3 Thermal Breadth Correlation
6.3.1 CTmin
6.3.2 CTmax
